miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24102 5' -54.8 NC_005262.1 + 19169 0.66 0.795246
Target:  5'- -cUCCUCCcauGCcUUGCGCGCGGg- -3'
miRNA:   3'- guAGGAGGucuUGuAGCGCGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 28056 0.66 0.795246
Target:  5'- aCAUCCUCUGGGACAgcaCGUaccGC-CGGCUc -3'
miRNA:   3'- -GUAGGAGGUCUUGUa--GCG---CGcGCUGA- -5'
24102 5' -54.8 NC_005262.1 + 33317 0.66 0.794279
Target:  5'- cCGUCgagUCGGAcgcaacuGCGUCGCuGCGCGGCa -3'
miRNA:   3'- -GUAGga-GGUCU-------UGUAGCG-CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 9388 0.66 0.785498
Target:  5'- --gCCUCCGcGAGC-UUGCGCaCGACg -3'
miRNA:   3'- guaGGAGGU-CUUGuAGCGCGcGCUGa -5'
24102 5' -54.8 NC_005262.1 + 11676 0.66 0.785498
Target:  5'- --gCCggCAGAGCuUCGCGCGCaACUu -3'
miRNA:   3'- guaGGagGUCUUGuAGCGCGCGcUGA- -5'
24102 5' -54.8 NC_005262.1 + 3809 0.66 0.781554
Target:  5'- cCAUCCUcgacggcCCGGAggaaggugccgagcGCccCGCGCGUGACg -3'
miRNA:   3'- -GUAGGA-------GGUCU--------------UGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 17070 0.66 0.776589
Target:  5'- gAUCCggucgugCCGGAuuGCGccggcuuguccacugCGCGCGCGGCg -3'
miRNA:   3'- gUAGGa------GGUCU--UGUa--------------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 35823 0.66 0.775591
Target:  5'- gCAUCaugggCCGGAgcgGCGUCgGCGCcGCGACc -3'
miRNA:   3'- -GUAGga---GGUCU---UGUAG-CGCG-CGCUGa -5'
24102 5' -54.8 NC_005262.1 + 1173 0.66 0.775591
Target:  5'- cCAUCCUgcgcggaagcCCAGuGCGaguUCGcCGCGCGAUUc -3'
miRNA:   3'- -GUAGGA----------GGUCuUGU---AGC-GCGCGCUGA- -5'
24102 5' -54.8 NC_005262.1 + 15070 0.66 0.775591
Target:  5'- aCAUCCgacacguugucCCAGAACGaCGCgucuuucugcgGCGCGGCg -3'
miRNA:   3'- -GUAGGa----------GGUCUUGUaGCG-----------CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 43185 0.66 0.765539
Target:  5'- gCAUCggCCAGGACAUCuacgagugggacGCGCuCGACa -3'
miRNA:   3'- -GUAGgaGGUCUUGUAG------------CGCGcGCUGa -5'
24102 5' -54.8 NC_005262.1 + 8204 0.66 0.765539
Target:  5'- --aCCUUCAuGAACAgguccaUCGCGCGCuGCg -3'
miRNA:   3'- guaGGAGGU-CUUGU------AGCGCGCGcUGa -5'
24102 5' -54.8 NC_005262.1 + 33869 0.66 0.75535
Target:  5'- uCGUCCUUCAGGcUAUCGCcgaGCGUGGu- -3'
miRNA:   3'- -GUAGGAGGUCUuGUAGCG---CGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 28149 0.66 0.75535
Target:  5'- cCAUCUUCCccGAGCGcgcggcgcaacUGCGCGCGGCg -3'
miRNA:   3'- -GUAGGAGGu-CUUGUa----------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 32013 0.66 0.745037
Target:  5'- aGUCa-CCGaGACgAUCGCGCGCGAUg -3'
miRNA:   3'- gUAGgaGGUcUUG-UAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 12467 0.66 0.745037
Target:  5'- aCGUCgCUCaCGGGGCG-C-CGCGCGGCa -3'
miRNA:   3'- -GUAG-GAG-GUCUUGUaGcGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 11933 0.66 0.745037
Target:  5'- cCAUCgUCgGGAACAUgGCGCacGCG-CUg -3'
miRNA:   3'- -GUAGgAGgUCUUGUAgCGCG--CGCuGA- -5'
24102 5' -54.8 NC_005262.1 + 46735 0.67 0.73461
Target:  5'- --gCCUaUCGGcGCcgUGCGCGCGACg -3'
miRNA:   3'- guaGGA-GGUCuUGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 28566 0.67 0.73461
Target:  5'- --gCUUCC---GCcgCGCGCGCGACg -3'
miRNA:   3'- guaGGAGGucuUGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 20820 0.67 0.724082
Target:  5'- aAUCgaCagGGAACAUCGCgggGCGCGGCa -3'
miRNA:   3'- gUAGgaGg-UCUUGUAGCG---CGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.