miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 37679 0.66 0.71834
Target:  5'- gGAUCGGGCGUGCA---GCUCG-UCg -3'
miRNA:   3'- gCUAGUCCGCGCGUacgUGGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 6383 0.66 0.71834
Target:  5'- -aGUCAGGuCGaGCGUGCugCCG-UCg -3'
miRNA:   3'- gcUAGUCC-GCgCGUACGugGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 26174 0.66 0.71834
Target:  5'- aCGAgu-GGCGCGCG---AUCCGAUUCa -3'
miRNA:   3'- -GCUaguCCGCGCGUacgUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 10460 0.66 0.71834
Target:  5'- gCGGUCGgcgagguagcGGCGCGCGcgGuCGCUCGccuuGUCCa -3'
miRNA:   3'- -GCUAGU----------CCGCGCGUa-C-GUGGGC----UAGG- -5'
24103 5' -56.6 NC_005262.1 + 32561 0.66 0.71834
Target:  5'- cCGAcUUGGGCGCGUcgaucgacagGCGCgCGAUCUu -3'
miRNA:   3'- -GCU-AGUCCGCGCGua--------CGUGgGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 32301 0.66 0.71834
Target:  5'- gCGAacgUCgAGGCaGCGCGUGCGCUguucaUGggCCg -3'
miRNA:   3'- -GCU---AG-UCCG-CGCGUACGUGG-----GCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 47286 0.66 0.71834
Target:  5'- gGGUCAGccccaGCGCA-GCGCCCaGcgCCu -3'
miRNA:   3'- gCUAGUCcg---CGCGUaCGUGGG-CuaGG- -5'
24103 5' -56.6 NC_005262.1 + 24727 0.66 0.71834
Target:  5'- uGAUCGcgcuGGCGCGCGcgaucggcgUGCGgCCGAa-- -3'
miRNA:   3'- gCUAGU----CCGCGCGU---------ACGUgGGCUagg -5'
24103 5' -56.6 NC_005262.1 + 34502 0.66 0.715208
Target:  5'- cCGuUCAcGGCGCGgAUGCGCUucacgagcucgucgCGGUUCg -3'
miRNA:   3'- -GCuAGU-CCGCGCgUACGUGG--------------GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 54296 0.66 0.707873
Target:  5'- gCGGUCGGGC-CGCAaaucGCACCaguGGUgCg -3'
miRNA:   3'- -GCUAGUCCGcGCGUa---CGUGGg--CUAgG- -5'
24103 5' -56.6 NC_005262.1 + 58758 0.66 0.707873
Target:  5'- cCGAUCAGGCGCcgGCcgGCgagcaacugccGCUgGAggcagCCg -3'
miRNA:   3'- -GCUAGUCCGCG--CGuaCG-----------UGGgCUa----GG- -5'
24103 5' -56.6 NC_005262.1 + 34566 0.66 0.707873
Target:  5'- aCGAUCcgaacgucguGuGCGCGCcgugcgGCGCCgUGAUCCa -3'
miRNA:   3'- -GCUAGu---------C-CGCGCGua----CGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 30500 0.66 0.707873
Target:  5'- aCGGcuUC-GGCGCccgGCGUGCGCgCGAUgCg -3'
miRNA:   3'- -GCU--AGuCCGCG---CGUACGUGgGCUAgG- -5'
24103 5' -56.6 NC_005262.1 + 28823 0.66 0.707873
Target:  5'- --cUCGaGCuCGCGUcGCGCUCGAUCCa -3'
miRNA:   3'- gcuAGUcCGcGCGUA-CGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 56007 0.66 0.697334
Target:  5'- gCGcUCGaGCaGCGCAU-CACCgCGAUCCg -3'
miRNA:   3'- -GCuAGUcCG-CGCGUAcGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 22608 0.66 0.697334
Target:  5'- gCGGUCgccGGGCGCGCAcGCgaucgcggcgguGCCC--UCCu -3'
miRNA:   3'- -GCUAG---UCCGCGCGUaCG------------UGGGcuAGG- -5'
24103 5' -56.6 NC_005262.1 + 45338 0.66 0.686735
Target:  5'- aGGUCugcaAGGCgGCGCggGCGuCCUGAaCCa -3'
miRNA:   3'- gCUAG----UCCG-CGCGuaCGU-GGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 481 0.66 0.686735
Target:  5'- gCGA-CGcGGCGCGCGUGUuccacgucgACgCCGAgCCa -3'
miRNA:   3'- -GCUaGU-CCGCGCGUACG---------UG-GGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 10422 0.66 0.686735
Target:  5'- gCGGUCugcGGCagGCGCAUgGCG-CCGAUCa -3'
miRNA:   3'- -GCUAGu--CCG--CGCGUA-CGUgGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 1835 0.66 0.676086
Target:  5'- uCGccgCAGGCuGCGCAUGCgguugccuGCuuGGUCg -3'
miRNA:   3'- -GCua-GUCCG-CGCGUACG--------UGggCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.