miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 3' -53.1 NC_005262.1 + 57464 0.66 0.878573
Target:  5'- gCGGCgACgaUGGAGGucgAgGGCGAGAAgCCg -3'
miRNA:   3'- -GCCGaUGg-ACUUCC---UgCCGUUCUU-GG- -5'
24104 3' -53.1 NC_005262.1 + 32692 0.66 0.877805
Target:  5'- cCGGCcgccgGCCUccAGGugGGCGAcaucaucGAGCUc -3'
miRNA:   3'- -GCCGa----UGGAcuUCCugCCGUU-------CUUGG- -5'
24104 3' -53.1 NC_005262.1 + 31088 0.66 0.876261
Target:  5'- cCGaGCUcgaugaugucgcccACCUGGAGGcCGGCG---GCCg -3'
miRNA:   3'- -GC-CGA--------------UGGACUUCCuGCCGUucuUGG- -5'
24104 3' -53.1 NC_005262.1 + 1853 0.66 0.870777
Target:  5'- gCGGUUGCCUGcuuGGuCGcGUAGGugaAGCCa -3'
miRNA:   3'- -GCCGAUGGACuu-CCuGC-CGUUC---UUGG- -5'
24104 3' -53.1 NC_005262.1 + 5750 0.66 0.870777
Target:  5'- uGGCggggGCCaguaGAAGGACGGUccu-GCCc -3'
miRNA:   3'- gCCGa---UGGa---CUUCCUGCCGuucuUGG- -5'
24104 3' -53.1 NC_005262.1 + 4893 0.66 0.862732
Target:  5'- gGGCcgccgGCCUGAucgcgcAGcGCGGCAGcAGCCa -3'
miRNA:   3'- gCCGa----UGGACU------UCcUGCCGUUcUUGG- -5'
24104 3' -53.1 NC_005262.1 + 9126 0.66 0.854446
Target:  5'- gCGGCUAU---GAGGAcCGGCGccGGGCCg -3'
miRNA:   3'- -GCCGAUGgacUUCCU-GCCGUu-CUUGG- -5'
24104 3' -53.1 NC_005262.1 + 62549 0.66 0.854446
Target:  5'- gCGGUUGuggggaucacguCCUGGucGGaGGCGGCGAGcuuuGCCg -3'
miRNA:   3'- -GCCGAU------------GGACU--UC-CUGCCGUUCu---UGG- -5'
24104 3' -53.1 NC_005262.1 + 53491 0.66 0.854446
Target:  5'- uCGGCacgGCC-GAAGugcaGACGccGCAGGGGCCg -3'
miRNA:   3'- -GCCGa--UGGaCUUC----CUGC--CGUUCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 51180 0.66 0.854446
Target:  5'- aGGCaGCCgacGAcGcGGCGGCccgcuGGAGCCg -3'
miRNA:   3'- gCCGaUGGa--CUuC-CUGCCGu----UCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 5048 0.67 0.828222
Target:  5'- cCGGC-GCCUGAucGGCGgGCAGGc-CCg -3'
miRNA:   3'- -GCCGaUGGACUucCUGC-CGUUCuuGG- -5'
24104 3' -53.1 NC_005262.1 + 45228 0.67 0.819055
Target:  5'- gGGCUcgGCCUGAAcGcCGGCAacucGGcGACCg -3'
miRNA:   3'- gCCGA--UGGACUUcCuGCCGU----UC-UUGG- -5'
24104 3' -53.1 NC_005262.1 + 19228 0.67 0.819055
Target:  5'- cCGuGaCUGCCUGcguaucGGcCGGCGAGAACa -3'
miRNA:   3'- -GC-C-GAUGGACuu----CCuGCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 62629 0.67 0.819055
Target:  5'- gGGCUuCCgcgcAGGAUGGCAAGc-CCg -3'
miRNA:   3'- gCCGAuGGacu-UCCUGCCGUUCuuGG- -5'
24104 3' -53.1 NC_005262.1 + 43844 0.67 0.819055
Target:  5'- uCGGCUACaucggGAcguGGGAUgacuacugcguGGCaAAGAGCCg -3'
miRNA:   3'- -GCCGAUGga---CU---UCCUG-----------CCG-UUCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 34135 0.67 0.819055
Target:  5'- gGGCUGCgCgGGcgcGGGCGGCAu--GCCg -3'
miRNA:   3'- gCCGAUG-GaCUu--CCUGCCGUucuUGG- -5'
24104 3' -53.1 NC_005262.1 + 33098 0.67 0.819055
Target:  5'- gGGUccguuuCCUGGAGG-CGGuCGAGcGCCg -3'
miRNA:   3'- gCCGau----GGACUUCCuGCC-GUUCuUGG- -5'
24104 3' -53.1 NC_005262.1 + 7260 0.67 0.819055
Target:  5'- uCGcGCUGCUcGAcGGAUGcCGGGAACCa -3'
miRNA:   3'- -GC-CGAUGGaCUuCCUGCcGUUCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 50713 0.67 0.818128
Target:  5'- aGGCgcagACCUuccucgacaagaaGAAGGcCGGCGAGAcGCa -3'
miRNA:   3'- gCCGa---UGGA-------------CUUCCuGCCGUUCU-UGg -5'
24104 3' -53.1 NC_005262.1 + 17192 0.67 0.809691
Target:  5'- gGGCgggAUCUGu-GGcgucuGCGGCGAGGACg -3'
miRNA:   3'- gCCGa--UGGACuuCC-----UGCCGUUCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.