miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 24136 0.66 0.344637
Target:  5'- uGCGGGUGAcGUucgagGAUGGGCG-GCaggaGGCg -3'
miRNA:   3'- cCGCCCGCU-CGa----CUGCCCGCgCG----CCG- -5'
24105 3' -64.8 NC_005262.1 + 4888 0.66 0.337051
Target:  5'- cGGuCGGGCcgccGGcCUGAuCGcGCaGCGCGGCa -3'
miRNA:   3'- -CC-GCCCGc---UC-GACU-GCcCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 44147 0.66 0.337051
Target:  5'- cGGcCGGacGCGcGCgcGAuCGGGCaggaGCGCGGCg -3'
miRNA:   3'- -CC-GCC--CGCuCGa-CU-GCCCG----CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 62511 0.66 0.337051
Target:  5'- cGGgGGGCGuccuGCUGGCGaaaaucgccGGCcuuuGgGCGGUu -3'
miRNA:   3'- -CCgCCCGCu---CGACUGC---------CCG----CgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 5138 0.66 0.337051
Target:  5'- -aCGGGCGGcGCUGAUccugcucGGCGCGCugaucGGUg -3'
miRNA:   3'- ccGCCCGCU-CGACUGc------CCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 61460 0.66 0.337051
Target:  5'- cGGCGGacgGCGAagcGCUaGACGacaucuuCGCGCGGCc -3'
miRNA:   3'- -CCGCC---CGCU---CGA-CUGCcc-----GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 61643 0.66 0.337051
Target:  5'- --aGGGCGAGgaGGaagugcuguacCGcGGCGCGCuggaGGCg -3'
miRNA:   3'- ccgCCCGCUCgaCU-----------GC-CCGCGCG----CCG- -5'
24105 3' -64.8 NC_005262.1 + 30859 0.66 0.337051
Target:  5'- cGGuCGGaGCGAucgugaaggcGCUGGCGaGcGuCGCGCGuGCg -3'
miRNA:   3'- -CC-GCC-CGCU----------CGACUGC-C-C-GCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 54101 0.66 0.329588
Target:  5'- gGGUuuGGcGCGAGCcuuguucaUGACGGuguuuGCGCaggaGCGGCa -3'
miRNA:   3'- -CCG--CC-CGCUCG--------ACUGCC-----CGCG----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 24786 0.66 0.329588
Target:  5'- -cCGGGCGAGCacuucGACaucgcgaaGGGCaaGCGCGaGCu -3'
miRNA:   3'- ccGCCCGCUCGa----CUG--------CCCG--CGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 45435 0.66 0.329588
Target:  5'- gGGCuuauGGGCGGGCUcGgaaccaucGCcGGCGCG-GGCa -3'
miRNA:   3'- -CCG----CCCGCUCGA-C--------UGcCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 466 0.66 0.329588
Target:  5'- --aGGGCGuugaccucGGC-GACGcGGCGCGCGuGUu -3'
miRNA:   3'- ccgCCCGC--------UCGaCUGC-CCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 13521 0.66 0.329588
Target:  5'- -aCGGGCucGGCcgGcGCGGGCGCgcccucguuGCGGCg -3'
miRNA:   3'- ccGCCCGc-UCGa-C-UGCCCGCG---------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40544 0.66 0.328848
Target:  5'- cGGCGGGCG-GCUcuuacgcGcCGGGCaacaccgGCGGUg -3'
miRNA:   3'- -CCGCCCGCuCGA-------CuGCCCGcg-----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34852 0.66 0.322247
Target:  5'- cGCGcGCGAGCacaUGACccucaucucgugGGGCGCGCucGCg -3'
miRNA:   3'- cCGCcCGCUCG---ACUG------------CCCGCGCGc-CG- -5'
24105 3' -64.8 NC_005262.1 + 15500 0.66 0.322247
Target:  5'- cGGCGgcucgcucaccGGCGAGCUGcACaaGGCGaUGUGGUu -3'
miRNA:   3'- -CCGC-----------CCGCUCGAC-UGc-CCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34981 0.66 0.315029
Target:  5'- cGCGacGCGAGCUcgagaugcGCGGGCGCGaGGUc -3'
miRNA:   3'- cCGCc-CGCUCGAc-------UGCCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 7524 0.66 0.315029
Target:  5'- -uCGGGCaGGUUcGGC-GGCGCGuCGGCg -3'
miRNA:   3'- ccGCCCGcUCGA-CUGcCCGCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 34950 0.66 0.315029
Target:  5'- cGGC-GGCaAGUUcGACGcGGCGCuCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGA-CUGC-CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 58563 0.66 0.315029
Target:  5'- aGGC-GGCGAgaaGCUGAUcGGCaCGcCGGCa -3'
miRNA:   3'- -CCGcCCGCU---CGACUGcCCGcGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.