miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 5' -54.6 NC_005262.1 + 30142 0.66 0.785483
Target:  5'- cUgGuCGCCGAAgcgccGGCGGA--UgCCGACg -3'
miRNA:   3'- aAgC-GCGGCUU-----UCGCCUuuAgGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 57882 0.66 0.785483
Target:  5'- aUCGCGUgGAGAuCGaGAAGgcgcucccgCCCGACa -3'
miRNA:   3'- aAGCGCGgCUUUcGC-CUUUa--------GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 13540 0.66 0.785483
Target:  5'- -gCGCGCCcucguugcGGCGGucGAUCUCGGCc -3'
miRNA:   3'- aaGCGCGGcuu-----UCGCCu-UUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 22363 0.66 0.77549
Target:  5'- -cCGCGUgGu--GCGGAGGgugUCCGGCg -3'
miRNA:   3'- aaGCGCGgCuuuCGCCUUUa--GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 23255 0.66 0.77549
Target:  5'- cUCGCGUCGAucauCGGugcGUCCCGuCg -3'
miRNA:   3'- aAGCGCGGCUuuc-GCCuu-UAGGGCuG- -5'
24108 5' -54.6 NC_005262.1 + 12251 0.66 0.765348
Target:  5'- gUCGCGUCGAuGGuCGGGcaccugucGAUCgCGGCc -3'
miRNA:   3'- aAGCGCGGCUuUC-GCCU--------UUAGgGCUG- -5'
24108 5' -54.6 NC_005262.1 + 22487 0.66 0.765348
Target:  5'- --aGCGCUGAagcuggcgcgcGAGCGGAucgcgaagcggcAGUCCCGcuACa -3'
miRNA:   3'- aagCGCGGCU-----------UUCGCCU------------UUAGGGC--UG- -5'
24108 5' -54.6 NC_005262.1 + 38043 0.66 0.765348
Target:  5'- gUCGCggGCCGuGAGCGGcu-UgCCGGCc -3'
miRNA:   3'- aAGCG--CGGCuUUCGCCuuuAgGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 17184 0.66 0.765348
Target:  5'- aUCGCGUCG--GGCGGGAucuguggcGUCUgCGGCg -3'
miRNA:   3'- aAGCGCGGCuuUCGCCUU--------UAGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 19654 0.66 0.755068
Target:  5'- aUCGCgcgcgcguccgGCCGGAAcGCGGGAAcgCCGAUg -3'
miRNA:   3'- aAGCG-----------CGGCUUU-CGCCUUUagGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 60971 0.66 0.755068
Target:  5'- -gCGCGCaaaCGAggucgaggcgcAGGUGGAGcgCCUGACg -3'
miRNA:   3'- aaGCGCG---GCU-----------UUCGCCUUuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 40591 0.66 0.755068
Target:  5'- gUCGCGCUGAcGGUGGcgcAGAUgCCGcaGCa -3'
miRNA:   3'- aAGCGCGGCUuUCGCC---UUUAgGGC--UG- -5'
24108 5' -54.6 NC_005262.1 + 5892 0.66 0.744662
Target:  5'- aUCGaCGUCGAugucGGGCGGGAGcgccuUCUCGAUc -3'
miRNA:   3'- aAGC-GCGGCU----UUCGCCUUU-----AGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 34584 0.66 0.744662
Target:  5'- -gCGCGCCGu--GCGGcgccguGAUCCaCGAg -3'
miRNA:   3'- aaGCGCGGCuuuCGCCu-----UUAGG-GCUg -5'
24108 5' -54.6 NC_005262.1 + 63593 0.66 0.744662
Target:  5'- cUCGUGCgCGcgcuGCGGAucGUCaCCGGCa -3'
miRNA:   3'- aAGCGCG-GCuuu-CGCCUu-UAG-GGCUG- -5'
24108 5' -54.6 NC_005262.1 + 44200 0.67 0.73414
Target:  5'- cUCGCaCCGAAGGCGacGAAuacaucAUCUCGGCc -3'
miRNA:   3'- aAGCGcGGCUUUCGC--CUU------UAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 10670 0.67 0.73414
Target:  5'- cUCGCGCgGcAucGCGGuuuucgugAAGUCgCCGACg -3'
miRNA:   3'- aAGCGCGgC-UuuCGCC--------UUUAG-GGCUG- -5'
24108 5' -54.6 NC_005262.1 + 8148 0.67 0.726713
Target:  5'- -gCGUGCCGGAcGCGGccacgagcgcgcggCCCGGCu -3'
miRNA:   3'- aaGCGCGGCUUuCGCCuuua----------GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 5207 0.67 0.723516
Target:  5'- -gCGCGaCCGAGGGCGu--AUCCUGcACg -3'
miRNA:   3'- aaGCGC-GGCUUUCGCcuuUAGGGC-UG- -5'
24108 5' -54.6 NC_005262.1 + 2868 0.67 0.723516
Target:  5'- -aCGCGCCGuucAGCGGGAAguaggCgUCGAUg -3'
miRNA:   3'- aaGCGCGGCuu-UCGCCUUUa----G-GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.