miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 42248 0.67 0.747866
Target:  5'- cCGCcuGCGGC--UCGACUUCGaCCGCa- -3'
miRNA:   3'- -GCGu-UGCCGuuAGUUGGAGC-GGUGcc -5'
24112 3' -53.6 NC_005263.2 + 42009 0.67 0.704927
Target:  5'- aCGUGcCGGCAGUgCGGCCg-GCCGCGc -3'
miRNA:   3'- -GCGUuGCCGUUA-GUUGGagCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 41855 0.67 0.72659
Target:  5'- uGCccGACGGCA--CGACCgCGCCugGc -3'
miRNA:   3'- gCG--UUGCCGUuaGUUGGaGCGGugCc -5'
24112 3' -53.6 NC_005263.2 + 41753 0.67 0.747866
Target:  5'- gGCGgcACGGCGcgAUCAACgaggagaUCGgCGCGGg -3'
miRNA:   3'- gCGU--UGCCGU--UAGUUGg------AGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 41567 0.66 0.808427
Target:  5'- aGCAAcacCGGCAcaucGUCAGCgUCGCgAUGc -3'
miRNA:   3'- gCGUU---GCCGU----UAGUUGgAGCGgUGCc -5'
24112 3' -53.6 NC_005263.2 + 40942 0.69 0.616268
Target:  5'- uCGCAGCGGCGAU-GGCCgCGCaauaGGg -3'
miRNA:   3'- -GCGUUGCCGUUAgUUGGaGCGgug-CC- -5'
24112 3' -53.6 NC_005263.2 + 40722 0.67 0.704927
Target:  5'- uCGCGACcGCAAagaacacCAACCcgaUCGCCGCGa -3'
miRNA:   3'- -GCGUUGcCGUUa------GUUGG---AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 40218 0.71 0.486161
Target:  5'- aGCAugGGCGAUCAuccGCCgauuccCGCUugGc -3'
miRNA:   3'- gCGUugCCGUUAGU---UGGa-----GCGGugCc -5'
24112 3' -53.6 NC_005263.2 + 39707 0.66 0.75833
Target:  5'- uCGCcgaGGCGGCGcgcuuccugGUCGGCCUgccugCGCCACu- -3'
miRNA:   3'- -GCG---UUGCCGU---------UAGUUGGA-----GCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 39395 0.66 0.788878
Target:  5'- aCGCGAUGgacGCGGcCGACCugUCGCCGCa- -3'
miRNA:   3'- -GCGUUGC---CGUUaGUUGG--AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 39167 0.68 0.671915
Target:  5'- gCGCGACGGCAucgguaugccgAUCAccgACCUCGaCgACa- -3'
miRNA:   3'- -GCGUUGCCGU-----------UAGU---UGGAGC-GgUGcc -5'
24112 3' -53.6 NC_005263.2 + 39139 0.67 0.703836
Target:  5'- aCGuCGGCGGCAccguGUCGGCgacguugCUCGaCACGGg -3'
miRNA:   3'- -GC-GUUGCCGU----UAGUUG-------GAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 38983 0.66 0.75833
Target:  5'- aCGCGAcCGGCAAUCGccGCUUCauGCC-CGu -3'
miRNA:   3'- -GCGUU-GCCGUUAGU--UGGAG--CGGuGCc -5'
24112 3' -53.6 NC_005263.2 + 38894 0.72 0.464631
Target:  5'- aCGcCGACGGCAccGUCAcgagcaaGCCggCGCCGCGc -3'
miRNA:   3'- -GC-GUUGCCGU--UAGU-------UGGa-GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 38834 0.66 0.797763
Target:  5'- -cCAACGGCAAgaugaucgcggacUCGAgCggCGUCACGGu -3'
miRNA:   3'- gcGUUGCCGUU-------------AGUUgGa-GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 38776 0.66 0.798742
Target:  5'- gCGCAA-GGCAuugccggCGACUUCGCCAg-- -3'
miRNA:   3'- -GCGUUgCCGUua-----GUUGGAGCGGUgcc -5'
24112 3' -53.6 NC_005263.2 + 38648 0.66 0.807467
Target:  5'- cCGCGuCGcGCAucgacgcCAACCUCGCCaagaucaaggugcGCGGc -3'
miRNA:   3'- -GCGUuGC-CGUua-----GUUGGAGCGG-------------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 38539 0.67 0.715801
Target:  5'- gGCAGCGaGCGcgCcGCCUggcaaGCCGCGa -3'
miRNA:   3'- gCGUUGC-CGUuaGuUGGAg----CGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 38440 0.72 0.434763
Target:  5'- aCGCcggccacggucaaGACGGCGAUCGagACgCUUGCCGCGu -3'
miRNA:   3'- -GCG-------------UUGCCGUUAGU--UG-GAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 37990 0.75 0.282284
Target:  5'- gGUGGCGGCAA-CGAaCUCGCCACGa -3'
miRNA:   3'- gCGUUGCCGUUaGUUgGAGCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.