miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 5' -61.1 NC_005263.2 + 12556 0.65 0.380377
Target:  5'- -gCCGGCgGCGCcguagcgcccgcccGcGCGCcgCCGGGcGCa -3'
miRNA:   3'- aaGGCUGgCGCG--------------U-CGCGuaGGUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 23161 0.66 0.374311
Target:  5'- aUCuCGACCGCGCaAGgGUucggacuggauAUCUGGGGg -3'
miRNA:   3'- aAG-GCUGGCGCG-UCgCG-----------UAGGUCCCg -5'
24114 5' -61.1 NC_005263.2 + 14376 0.66 0.374311
Target:  5'- -cCCGauGCCGgGCcGCuCGUCCGGGuGCg -3'
miRNA:   3'- aaGGC--UGGCgCGuCGcGUAGGUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 12214 0.66 0.374311
Target:  5'- gUCuCGACCGCaccgacaucaacGCGGCgaaGUAUuuGGGGCu -3'
miRNA:   3'- aAG-GCUGGCG------------CGUCG---CGUAggUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 15252 0.66 0.371731
Target:  5'- gUCCGGCUacaugcugcggcuuGuCGCGGCGCuga-AGGGCg -3'
miRNA:   3'- aAGGCUGG--------------C-GCGUCGCGuaggUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 22119 0.66 0.36576
Target:  5'- -gCCGGCaCGCuGCaAGCGCGaucgCCggacGGGGCg -3'
miRNA:   3'- aaGGCUG-GCG-CG-UCGCGUa---GG----UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 38133 0.66 0.36576
Target:  5'- -aCCgGACgGCGU-GCGCAgccCgCAGGGCa -3'
miRNA:   3'- aaGG-CUGgCGCGuCGCGUa--G-GUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 21190 0.66 0.36576
Target:  5'- -gCgGACgCGCGCGGCGCGggCGaguGGGUg -3'
miRNA:   3'- aaGgCUG-GCGCGUCGCGUagGU---CCCG- -5'
24114 5' -61.1 NC_005263.2 + 21987 0.66 0.357344
Target:  5'- -gUCGAcCCGCugacuucgaGCGGCGCGUaCCAGGacGCg -3'
miRNA:   3'- aaGGCU-GGCG---------CGUCGCGUA-GGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 3557 0.66 0.357344
Target:  5'- ----uGCCGCGCAGCGCGUC---GGCc -3'
miRNA:   3'- aaggcUGGCGCGUCGCGUAGgucCCG- -5'
24114 5' -61.1 NC_005263.2 + 21454 0.66 0.349065
Target:  5'- aUCCGgaagcgccACCGCuGCGGCGCcacuggcaaAUCCGGcGCa -3'
miRNA:   3'- aAGGC--------UGGCG-CGUCGCG---------UAGGUCcCG- -5'
24114 5' -61.1 NC_005263.2 + 19051 0.66 0.340924
Target:  5'- -gCgGGCCGCGUcGUGCuAUCCAaGGCc -3'
miRNA:   3'- aaGgCUGGCGCGuCGCG-UAGGUcCCG- -5'
24114 5' -61.1 NC_005263.2 + 7700 0.66 0.340924
Target:  5'- -gUCGGCCGCGCGGCGUGUgCAccGUu -3'
miRNA:   3'- aaGGCUGGCGCGUCGCGUAgGUccCG- -5'
24114 5' -61.1 NC_005263.2 + 17711 0.66 0.340924
Target:  5'- gUCCGAucCCGaCG-AGCGCcgCCgcauGGGGCu -3'
miRNA:   3'- aAGGCU--GGC-GCgUCGCGuaGG----UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 2690 0.66 0.332921
Target:  5'- -gCUGAUCGCGCGGCcGCucggCAGGuGCa -3'
miRNA:   3'- aaGGCUGGCGCGUCG-CGuag-GUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 13949 0.66 0.332129
Target:  5'- -gUCGAgCGCauaggacGCGGCGCGcguUCgCGGGGCg -3'
miRNA:   3'- aaGGCUgGCG-------CGUCGCGU---AG-GUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 29233 0.67 0.325057
Target:  5'- -gUCGGCgCGCaGCGGCGCG-CCGaGGCa -3'
miRNA:   3'- aaGGCUG-GCG-CGUCGCGUaGGUcCCG- -5'
24114 5' -61.1 NC_005263.2 + 13727 0.67 0.325057
Target:  5'- gUCCGACgUGCucGCGGCGUuaccgCCGGcGGCc -3'
miRNA:   3'- aAGGCUG-GCG--CGUCGCGua---GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 18679 0.67 0.317332
Target:  5'- aUCCGuuCGCGCAGCaag-CUAGcGGCg -3'
miRNA:   3'- aAGGCugGCGCGUCGcguaGGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 12834 0.67 0.305261
Target:  5'- gUCCaGuuCGCGCAGCGCAUuCCacugccacuugaucgAGGGg -3'
miRNA:   3'- aAGG-CugGCGCGUCGCGUA-GG---------------UCCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.