miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 43087 0.71 0.225937
Target:  5'- gGCCGGCugucGAGCGCGGcgGAaggcACCGUGUc -3'
miRNA:   3'- gCGGCCG----UUCGCGCUa-CU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 43036 0.67 0.404185
Target:  5'- gGuuGGCAccugacgcGGCGCGAcaaUGGcCCGCGUu -3'
miRNA:   3'- gCggCCGU--------UCGCGCU---ACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 42916 0.69 0.333635
Target:  5'- aCGCCGcGCcuGCagGCGAUGuucaaucaggcgcaAACCGCGCu -3'
miRNA:   3'- -GCGGC-CGuuCG--CGCUAC--------------UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 42851 0.7 0.261847
Target:  5'- uGCCGGCAccgcccgcugaugacGGCGCc-UGAucgcgucaauggcguGCCGCGCGc -3'
miRNA:   3'- gCGGCCGU---------------UCGCGcuACU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 42046 0.69 0.320345
Target:  5'- uGUCGGC--GCGCG-UGAAgCGCGCc -3'
miRNA:   3'- gCGGCCGuuCGCGCuACUUgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 42012 0.77 0.092689
Target:  5'- uGCCGGCA-GUGCGGccGGCCGCGCc -3'
miRNA:   3'- gCGGCCGUuCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 41752 0.67 0.441387
Target:  5'- gGgCGGCAcGGCGCGAUcaacgaggaGAuCgGCGCGg -3'
miRNA:   3'- gCgGCCGU-UCGCGCUA---------CUuGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 41549 0.67 0.450987
Target:  5'- aCGCgCGGCGcgccguGGCgGCGAUGcgagcuuUCGCGCGu -3'
miRNA:   3'- -GCG-GCCGU------UCG-CGCUACuu-----GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 41354 0.76 0.103611
Target:  5'- uCGcCCGGC--GCGCGAUGGACgugaCGCGCGa -3'
miRNA:   3'- -GC-GGCCGuuCGCGCUACUUG----GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 41224 0.74 0.156202
Target:  5'- uGCCGGCAAGCccuCGAUGGacaauGCCGuCGCc -3'
miRNA:   3'- gCGGCCGUUCGc--GCUACU-----UGGC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 41051 0.66 0.460701
Target:  5'- gCGCUcGCAccugccauuGGCGCGAUGcGCCauccgucggcGCGCGa -3'
miRNA:   3'- -GCGGcCGU---------UCGCGCUACuUGG----------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 40923 0.66 0.470524
Target:  5'- aGCCgcacauacccgGGUAucgcAGCgGCGAUG-GCCGCGCa -3'
miRNA:   3'- gCGG-----------CCGU----UCG-CGCUACuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 40250 0.71 0.225937
Target:  5'- gGCgGGCAccuggGGCGCGGUGAucuuCCGCccguucGCGg -3'
miRNA:   3'- gCGgCCGU-----UCGCGCUACUu---GGCG------CGC- -5'
24116 3' -59.1 NC_005263.2 + 40020 0.66 0.494522
Target:  5'- uGCUGGCGuuuuugacuGGCGCGuucguaggacugaucAcgGAACuCGCGCGg -3'
miRNA:   3'- gCGGCCGU---------UCGCGC---------------Ua-CUUG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 39691 0.73 0.173858
Target:  5'- aCGCgauggGGCGAGCGCGAgcugGAaaugGCCGgCGCGg -3'
miRNA:   3'- -GCGg----CCGUUCGCGCUa---CU----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 39334 0.67 0.441387
Target:  5'- gCGCgGGCcGGCGUcAUccuGCCGCGCa -3'
miRNA:   3'- -GCGgCCGuUCGCGcUAcu-UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 39300 0.77 0.087646
Target:  5'- gGCCGGCAGGCGC-AUGcg-CGCGCGa -3'
miRNA:   3'- gCGGCCGUUCGCGcUACuugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 39094 0.69 0.319576
Target:  5'- aGCCGGaCGGcgaguacGCGCGAcucgUGcGCCGUGCGu -3'
miRNA:   3'- gCGGCC-GUU-------CGCGCU----ACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 38918 0.66 0.499592
Target:  5'- aGCCGGCGc-CGCGccGAGCucgacguCGCGCa -3'
miRNA:   3'- gCGGCCGUucGCGCuaCUUG-------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 38609 0.66 0.480453
Target:  5'- aGCCcGCGcaCGCGAUGGauagcGCCGgCGCGa -3'
miRNA:   3'- gCGGcCGUucGCGCUACU-----UGGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.