miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 47921 0.66 0.702759
Target:  5'- ---cCGGGCGCAcGGGCAgCGgGCuCGCc -3'
miRNA:   3'- cuaaGUCCGCGUcUUCGU-GUgCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 5202 0.66 0.702759
Target:  5'- ---gCAGGCGCGGcgucGCuAC-CGUCGCg -3'
miRNA:   3'- cuaaGUCCGCGUCuu--CG-UGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3198 0.66 0.702759
Target:  5'- ----gAGGcCGguGAgccGGCccgGCGCGCCGCc -3'
miRNA:   3'- cuaagUCC-GCguCU---UCG---UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 14895 0.66 0.702759
Target:  5'- cGAgugCAGGUGCGGcacGAGUGCGCcaaGCgGCa -3'
miRNA:   3'- -CUaa-GUCCGCGUC---UUCGUGUG---CGgCG- -5'
24120 3' -54.8 NC_005263.2 + 2389 0.66 0.702759
Target:  5'- cGAgcggCAGGC-CGG-GGCACcacgcuuCGCCGCg -3'
miRNA:   3'- -CUaa--GUCCGcGUCuUCGUGu------GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 6171 0.66 0.702759
Target:  5'- --aUCAGGCcCAGAAuCACGCGCagGUc -3'
miRNA:   3'- cuaAGUCCGcGUCUUcGUGUGCGg-CG- -5'
24120 3' -54.8 NC_005263.2 + 15310 0.66 0.702759
Target:  5'- --gUCAGcgagcuGCGC-GAGGCGCGgGCCGa -3'
miRNA:   3'- cuaAGUC------CGCGuCUUCGUGUgCGGCg -5'
24120 3' -54.8 NC_005263.2 + 36085 0.66 0.702759
Target:  5'- -----cGGCGCAagcuuGAGCGCGCcGUCGCg -3'
miRNA:   3'- cuaaguCCGCGUc----UUCGUGUG-CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 32615 0.66 0.702759
Target:  5'- --gUCcGGUGCuGAuGCucacCGCGCCGCc -3'
miRNA:   3'- cuaAGuCCGCGuCUuCGu---GUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 42941 0.66 0.691697
Target:  5'- --aUCAGGCGCAaa--C-CGCGCUGCu -3'
miRNA:   3'- cuaAGUCCGCGUcuucGuGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 22544 0.66 0.691697
Target:  5'- -----cGGCGCGGAcGCcgACGUCGCg -3'
miRNA:   3'- cuaaguCCGCGUCUuCGugUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 15356 0.66 0.691697
Target:  5'- -----cGGCGCuGAAcgucguacuGCGCACGCUGUc -3'
miRNA:   3'- cuaaguCCGCGuCUU---------CGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 36 0.66 0.691697
Target:  5'- --gUCAcuGGCGCGGcAGGUcggGCGCGCCu- -3'
miRNA:   3'- cuaAGU--CCGCGUC-UUCG---UGUGCGGcg -5'
24120 3' -54.8 NC_005263.2 + 47437 0.66 0.687254
Target:  5'- ----aAGGCGCGcuacgauGAGGCguucgaucuggccgGCACGUCGCg -3'
miRNA:   3'- cuaagUCCGCGU-------CUUCG--------------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 41541 0.66 0.681688
Target:  5'- --gUCAGGCGUcgaugaguaccugaAGAAGCaACaccggcacaucgucaGCGUCGCg -3'
miRNA:   3'- cuaAGUCCGCG--------------UCUUCG-UG---------------UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 27663 0.66 0.680574
Target:  5'- --gUCucGGCgGCGGcAAGCACG-GCCGCc -3'
miRNA:   3'- cuaAGu-CCG-CGUC-UUCGUGUgCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 43295 0.66 0.680574
Target:  5'- aGAUUCcgggcGGCGUAuGAGCGuCACGCgaCGCg -3'
miRNA:   3'- -CUAAGu----CCGCGUcUUCGU-GUGCG--GCG- -5'
24120 3' -54.8 NC_005263.2 + 16670 0.66 0.680574
Target:  5'- cGUUCGGcGUgaacauucaGCAGGAcgugccGCACAUGCUGCa -3'
miRNA:   3'- cUAAGUC-CG---------CGUCUU------CGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 16536 0.66 0.680574
Target:  5'- --gUC-GGCGUugucGAGCACggcGCGCCGCc -3'
miRNA:   3'- cuaAGuCCGCGuc--UUCGUG---UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 28258 0.66 0.680574
Target:  5'- ------cGCGCAccuGCACGCGCUGCa -3'
miRNA:   3'- cuaagucCGCGUcuuCGUGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.