miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 7977 0.66 0.663721
Target:  5'- aCGCGGCGCcagaGCU--GCACGAG-UCGg -3'
miRNA:   3'- cGCGCCGCG----CGAcaUGUGCUUgAGCa -5'
24120 5' -56.2 NC_005263.2 + 3990 0.66 0.663721
Target:  5'- uUGCGGCGUuaaGCUGcUGCGUGAcCUCGa -3'
miRNA:   3'- cGCGCCGCG---CGAC-AUGUGCUuGAGCa -5'
24120 5' -56.2 NC_005263.2 + 9716 0.66 0.652752
Target:  5'- cGCuGCGGCGCGCU-UGC----GCUCGUu -3'
miRNA:   3'- -CG-CGCCGCGCGAcAUGugcuUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 36143 0.66 0.651655
Target:  5'- aGCGCaaguacgGGCGCGCgcucgAgGCGAACgUCGa -3'
miRNA:   3'- -CGCG-------CCGCGCGaca--UgUGCUUG-AGCa -5'
24120 5' -56.2 NC_005263.2 + 43048 0.66 0.648359
Target:  5'- aCGCGGCGCGacaauggcccgcGUugGCGggUUUGa -3'
miRNA:   3'- cGCGCCGCGCga----------CAugUGCuuGAGCa -5'
24120 5' -56.2 NC_005263.2 + 30583 0.66 0.630769
Target:  5'- cCGCuGcGCGCGCUGUacaGCGCGAucagaucaucCUCGg -3'
miRNA:   3'- cGCG-C-CGCGCGACA---UGUGCUu---------GAGCa -5'
24120 5' -56.2 NC_005263.2 + 2668 0.66 0.619774
Target:  5'- gGUGCaGGCGUGCguUGUgguagcugaucGCGCGGccGCUCGg -3'
miRNA:   3'- -CGCG-CCGCGCG--ACA-----------UGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 20827 0.66 0.619774
Target:  5'- gGCGCGGCucggccucGCGCaGUcgggccaauucgACGCGAGCgUCGc -3'
miRNA:   3'- -CGCGCCG--------CGCGaCA------------UGUGCUUG-AGCa -5'
24120 5' -56.2 NC_005263.2 + 24700 0.66 0.60879
Target:  5'- -gGCGGCGCGCcgaacGUGC-CGGGCggCGc -3'
miRNA:   3'- cgCGCCGCGCGa----CAUGuGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 32095 0.66 0.60879
Target:  5'- cGUGCGGCgGCGUcgGUGCGauCGAGCgcuUCGa -3'
miRNA:   3'- -CGCGCCG-CGCGa-CAUGU--GCUUG---AGCa -5'
24120 5' -56.2 NC_005263.2 + 23892 0.67 0.597826
Target:  5'- aGCGUGaGCGCGCUcGUgaGCGCGcccGCgagCGUg -3'
miRNA:   3'- -CGCGC-CGCGCGA-CA--UGUGCu--UGa--GCA- -5'
24120 5' -56.2 NC_005263.2 + 13104 0.67 0.597826
Target:  5'- -aGCGGCGUGUUGaAUugGAAgaauucCUCGg -3'
miRNA:   3'- cgCGCCGCGCGACaUGugCUU------GAGCa -5'
24120 5' -56.2 NC_005263.2 + 42153 0.67 0.597826
Target:  5'- cGCGaGGUGCGCcaguugccgGUGCACGAcaugacGCUCa- -3'
miRNA:   3'- -CGCgCCGCGCGa--------CAUGUGCU------UGAGca -5'
24120 5' -56.2 NC_005263.2 + 17987 0.67 0.597826
Target:  5'- -aGCGGCGUGCaGaacUACGCGAGCg--- -3'
miRNA:   3'- cgCGCCGCGCGaC---AUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 828 0.67 0.597826
Target:  5'- uGCGCuucGGCGCGCacGUcacuaccgaGCGCGGACagCGUa -3'
miRNA:   3'- -CGCG---CCGCGCGa-CA---------UGUGCUUGa-GCA- -5'
24120 5' -56.2 NC_005263.2 + 4088 0.67 0.597826
Target:  5'- --aCGGUGCGUUGUGCGCGAcgaauggcgaGC-CGUu -3'
miRNA:   3'- cgcGCCGCGCGACAUGUGCU----------UGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 19396 0.67 0.586891
Target:  5'- -gGCGGCGCGCaGUACggcaACGcGCgCGUu -3'
miRNA:   3'- cgCGCCGCGCGaCAUG----UGCuUGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 14108 0.67 0.586891
Target:  5'- uGCGCGGCGguCGCcGU-CGCGA--UCGUa -3'
miRNA:   3'- -CGCGCCGC--GCGaCAuGUGCUugAGCA- -5'
24120 5' -56.2 NC_005263.2 + 41687 0.67 0.585799
Target:  5'- gGCGCGGacuGCgGCcGUACGCGGGCaaggagaacauccUCGUa -3'
miRNA:   3'- -CGCGCCg--CG-CGaCAUGUGCUUG-------------AGCA- -5'
24120 5' -56.2 NC_005263.2 + 24210 0.67 0.575994
Target:  5'- cGCG-GGCGCGCU---CACGAGCgCGc -3'
miRNA:   3'- -CGCgCCGCGCGAcauGUGCUUGaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.