miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 32998 0.66 0.739052
Target:  5'- uGCAGGAcgGGCUCGa-GAacUGGUACGAcUCg -3'
miRNA:   3'- -CGUUCU--UCGAGCggCU--GCCGUGCU-AG- -5'
24121 3' -54.4 NC_005263.2 + 29051 0.66 0.739052
Target:  5'- cGCAGGccGCgcggcgCGUCcucggGGCGGCGCGcAUCg -3'
miRNA:   3'- -CGUUCuuCGa-----GCGG-----CUGCCGUGC-UAG- -5'
24121 3' -54.4 NC_005263.2 + 44918 0.66 0.739052
Target:  5'- ------cGCUCGCCGACGcGCAgCGGc- -3'
miRNA:   3'- cguucuuCGAGCGGCUGC-CGU-GCUag -5'
24121 3' -54.4 NC_005263.2 + 18636 0.66 0.739052
Target:  5'- gGCAacccGGgcGC-CGCUGGCGGUACGc-- -3'
miRNA:   3'- -CGU----UCuuCGaGCGGCUGCCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 40661 0.66 0.739052
Target:  5'- aGCAGGAAGCcuuggcauUCGUgcgcuaccugcuCGACGcGC-CGAUCu -3'
miRNA:   3'- -CGUUCUUCG--------AGCG------------GCUGC-CGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 19475 0.66 0.739052
Target:  5'- gGCAGGAcguGCUcaCGCCGAucaCGaGCgauACGAUCa -3'
miRNA:   3'- -CGUUCUu--CGA--GCGGCU---GC-CG---UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 26710 0.66 0.737985
Target:  5'- aGCAGGAcgAGCUcCGUgugcaugCGAUGGUACGuuuUCa -3'
miRNA:   3'- -CGUUCU--UCGA-GCG-------GCUGCCGUGCu--AG- -5'
24121 3' -54.4 NC_005263.2 + 1269 0.66 0.728338
Target:  5'- cCGGGuaAGGCUCaGUCGgaGCGGCGCGAa- -3'
miRNA:   3'- cGUUC--UUCGAG-CGGC--UGCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 19742 0.66 0.728338
Target:  5'- uGCGAucGGCgcuggcgCGCUGGCGGCGCu--- -3'
miRNA:   3'- -CGUUcuUCGa------GCGGCUGCCGUGcuag -5'
24121 3' -54.4 NC_005263.2 + 43724 0.66 0.728338
Target:  5'- uGCAAGua-UUCGCCGACcGCAUGcgCu -3'
miRNA:   3'- -CGUUCuucGAGCGGCUGcCGUGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 43920 0.66 0.728338
Target:  5'- gGCGcAGAAGCacaCGCCGcuGCaGCACGAg- -3'
miRNA:   3'- -CGU-UCUUCGa--GCGGC--UGcCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 17379 0.66 0.717525
Target:  5'- cGCGuGAAGCUgucUGCCGgcGCGGC-CGcgCg -3'
miRNA:   3'- -CGUuCUUCGA---GCGGC--UGCCGuGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 16394 0.66 0.717525
Target:  5'- ---uGAAGCUgGCCGGCaucgcgGGUGCGGUa -3'
miRNA:   3'- cguuCUUCGAgCGGCUG------CCGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 29063 0.66 0.717525
Target:  5'- aGCAcGAcgcGGCcCGCU-ACGGCGCGAUa -3'
miRNA:   3'- -CGUuCU---UCGaGCGGcUGCCGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 43759 0.66 0.714264
Target:  5'- aGCAGGAgaucguuaAGUgaauuugcacgauaUCGUgcGCGGCGCGAUCa -3'
miRNA:   3'- -CGUUCU--------UCG--------------AGCGgcUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 36805 0.66 0.707719
Target:  5'- gGCGAGGccauaaauugccgcuGCUCGUCG-C-GCACGAUCa -3'
miRNA:   3'- -CGUUCUu--------------CGAGCGGCuGcCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 8035 0.66 0.706625
Target:  5'- uGCGAGgcGUccgCGCCGugGcgccGCGCGAg- -3'
miRNA:   3'- -CGUUCuuCGa--GCGGCugC----CGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 28049 0.66 0.706625
Target:  5'- aGCAucaguuAGcAGCgCGUCGcacucaacgcGCGGCACGAUCc -3'
miRNA:   3'- -CGU------UCuUCGaGCGGC----------UGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 18746 0.66 0.706625
Target:  5'- cGCcAGAucGGCgcgaUCGuaGGCGGCGCGGUg -3'
miRNA:   3'- -CGuUCU--UCG----AGCggCUGCCGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 28498 0.66 0.706625
Target:  5'- aCGAGgcGUUCGCuucaaucaCGAgCGGCACGAa- -3'
miRNA:   3'- cGUUCuuCGAGCG--------GCU-GCCGUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.