miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 5' -59.4 NC_005263.2 + 44874 0.65 0.458277
Target:  5'- gUGCAGauGCUGCCcggcgucaucgggGCgggcgGCGGCCggGCCGg -3'
miRNA:   3'- -ACGUU--UGACGG-------------CG-----UGCCGGagCGGCa -5'
24124 5' -59.4 NC_005263.2 + 38508 0.65 0.458277
Target:  5'- cGCGAugaucgcGCUGCCGCaaugggACGGCaCgcagCGCCu- -3'
miRNA:   3'- aCGUU-------UGACGGCG------UGCCG-Ga---GCGGca -5'
24124 5' -59.4 NC_005263.2 + 3180 0.66 0.453363
Target:  5'- cGCGgaauAACUGCCGCugcgcgucggcgagcGCGGCCaggaUCggGCCGa -3'
miRNA:   3'- aCGU----UUGACGGCG---------------UGCCGG----AG--CGGCa -5'
24124 5' -59.4 NC_005263.2 + 3305 0.66 0.453363
Target:  5'- uUGCcuGGGCgcgGCCGCGCGGUgUucaacgucugcgcgcCGCCGg -3'
miRNA:   3'- -ACG--UUUGa--CGGCGUGCCGgA---------------GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 6764 0.66 0.449452
Target:  5'- cGCGcGCcggGCgaGCuCGGCCUCGUCGa -3'
miRNA:   3'- aCGUuUGa--CGg-CGuGCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 19985 0.66 0.449452
Target:  5'- gUGCAAgacggcgccACUGCCGuCAacgacgcgauCGGCCgCGCCa- -3'
miRNA:   3'- -ACGUU---------UGACGGC-GU----------GCCGGaGCGGca -5'
24124 5' -59.4 NC_005263.2 + 41803 0.66 0.449452
Target:  5'- uUGCAAACcggGCgCGC-CGGUgUUGCUGUu -3'
miRNA:   3'- -ACGUUUGa--CG-GCGuGCCGgAGCGGCA- -5'
24124 5' -59.4 NC_005263.2 + 21580 0.66 0.449452
Target:  5'- cGCGuGCUcGCCGC-CGGCgUcgaCGCCGc -3'
miRNA:   3'- aCGUuUGA-CGGCGuGCCGgA---GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 20320 0.66 0.448477
Target:  5'- gGCGAugUaCCGCGCgaagcauGGCCUgcCGCCGc -3'
miRNA:   3'- aCGUUugAcGGCGUG-------CCGGA--GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 15824 0.66 0.446531
Target:  5'- cGaCAAACgaugcGCCGUucgccacuucgaucACGGCCUUGUCGa -3'
miRNA:   3'- aC-GUUUGa----CGGCG--------------UGCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 24967 0.66 0.439757
Target:  5'- cGCAGAUcggcaacacgaUGCUgGC-CGGCCUgGCCGc -3'
miRNA:   3'- aCGUUUG-----------ACGG-CGuGCCGGAgCGGCa -5'
24124 5' -59.4 NC_005263.2 + 35620 0.66 0.439757
Target:  5'- cGCAGGaUGCCGCAauGCg-CGCCGc -3'
miRNA:   3'- aCGUUUgACGGCGUgcCGgaGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 11459 0.66 0.439757
Target:  5'- aUGCAAgccgagcucgcGCUGCCGCGCacuguuaaacuGcGCCgUCGCCu- -3'
miRNA:   3'- -ACGUU-----------UGACGGCGUG-----------C-CGG-AGCGGca -5'
24124 5' -59.4 NC_005263.2 + 30857 0.66 0.439757
Target:  5'- ---cGACUGCuUGCcCGGCCUUGUCGa -3'
miRNA:   3'- acguUUGACG-GCGuGCCGGAGCGGCa -5'
24124 5' -59.4 NC_005263.2 + 1432 0.66 0.430182
Target:  5'- cGCcuuGGCUGCgCGCGaGGCUUCGCgGc -3'
miRNA:   3'- aCGu--UUGACG-GCGUgCCGGAGCGgCa -5'
24124 5' -59.4 NC_005263.2 + 39973 0.66 0.430182
Target:  5'- cGCAAgaaGCUGuCCuGCAUaugGGCCUgcCGCCGa -3'
miRNA:   3'- aCGUU---UGAC-GG-CGUG---CCGGA--GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 31235 0.66 0.430182
Target:  5'- uUGCAGgggcGCUucgguuCCGCGCGGCgCggCGCCGg -3'
miRNA:   3'- -ACGUU----UGAc-----GGCGUGCCG-Ga-GCGGCa -5'
24124 5' -59.4 NC_005263.2 + 19704 0.66 0.430182
Target:  5'- aGCGAuCUGCaCGCcggcCGGCUUCGUgGUc -3'
miRNA:   3'- aCGUUuGACG-GCGu---GCCGGAGCGgCA- -5'
24124 5' -59.4 NC_005263.2 + 11944 0.66 0.430182
Target:  5'- cGCAccg-GUCGCGCaGGCCgUCGCCa- -3'
miRNA:   3'- aCGUuugaCGGCGUG-CCGG-AGCGGca -5'
24124 5' -59.4 NC_005263.2 + 19741 0.66 0.430182
Target:  5'- aUGCGAucggcGCUGgCGCgcugGCGGCgCUCgugGCCGUg -3'
miRNA:   3'- -ACGUU-----UGACgGCG----UGCCG-GAG---CGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.