miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24126 5' -54.2 NC_005263.2 + 15674 0.66 0.772028
Target:  5'- uGCGCuUGGCGUGCCaagagcGGCCGG-CGAGc -3'
miRNA:   3'- gCGUG-GCUGUAUGG------CCGGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 47478 0.66 0.772028
Target:  5'- gCGuCACUGGCAgcACCGGCCcgcuGUCGGGc -3'
miRNA:   3'- -GC-GUGGCUGUa-UGGCCGGc---UAGUUCu -5'
24126 5' -54.2 NC_005263.2 + 19016 0.66 0.761757
Target:  5'- aCGCACUGACucgcGUAgcgaCGGCCGAUgcgcgccgcccCGAGGa -3'
miRNA:   3'- -GCGUGGCUG----UAUg---GCCGGCUA-----------GUUCU- -5'
24126 5' -54.2 NC_005263.2 + 27222 0.66 0.761757
Target:  5'- uGCACCGccgcucgugaGCGUgaucgcgccGCCGGCCGAUagcguuAGGu -3'
miRNA:   3'- gCGUGGC----------UGUA---------UGGCCGGCUAgu----UCU- -5'
24126 5' -54.2 NC_005263.2 + 3148 0.66 0.761757
Target:  5'- aGCACCGACGaGCacguGGCCGGgcuUCGuggcgcGGAa -3'
miRNA:   3'- gCGUGGCUGUaUGg---CCGGCU---AGU------UCU- -5'
24126 5' -54.2 NC_005263.2 + 44958 0.66 0.761757
Target:  5'- aGC-CCGGCcaGCUGGCCGAcuucuUCcAGAa -3'
miRNA:   3'- gCGuGGCUGuaUGGCCGGCU-----AGuUCU- -5'
24126 5' -54.2 NC_005263.2 + 18745 0.66 0.760723
Target:  5'- gGCGCCGGguUACCGGCgccugcuCGcgCAcccGGAa -3'
miRNA:   3'- gCGUGGCUguAUGGCCG-------GCuaGU---UCU- -5'
24126 5' -54.2 NC_005263.2 + 5777 0.66 0.751352
Target:  5'- aCGCuucggUCGGCAccUugCGGCCGGUCGc-- -3'
miRNA:   3'- -GCGu----GGCUGU--AugGCCGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 38655 0.66 0.751352
Target:  5'- gCGCAUCGACGccaACCucGCCaaGAUCAAGGu -3'
miRNA:   3'- -GCGUGGCUGUa--UGGc-CGG--CUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 34935 0.66 0.751352
Target:  5'- aCGCACuCGGCGUuaguGCCGuGCCGG-CAGc- -3'
miRNA:   3'- -GCGUG-GCUGUA----UGGC-CGGCUaGUUcu -5'
24126 5' -54.2 NC_005263.2 + 23168 0.66 0.751352
Target:  5'- gCGCACCGcCGUGCCGccgccaCCGAaCGGGu -3'
miRNA:   3'- -GCGUGGCuGUAUGGCc-----GGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 26002 0.66 0.750304
Target:  5'- gCGUGCCGGCGgcaGCCGucacgccugguguGCCGGUCAc-- -3'
miRNA:   3'- -GCGUGGCUGUa--UGGC-------------CGGCUAGUucu -5'
24126 5' -54.2 NC_005263.2 + 36302 0.66 0.740821
Target:  5'- uCGCGCgCGAagugacgACCGGCgCGuUCGAGGa -3'
miRNA:   3'- -GCGUG-GCUgua----UGGCCG-GCuAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 30303 0.66 0.740821
Target:  5'- aGCGCCgGGCGcgGCCGGCgucuugacgaCGAUCGAu- -3'
miRNA:   3'- gCGUGG-CUGUa-UGGCCG----------GCUAGUUcu -5'
24126 5' -54.2 NC_005263.2 + 18103 0.66 0.740821
Target:  5'- aGCucaaGCCGACGaaGCCGGCCGAg----- -3'
miRNA:   3'- gCG----UGGCUGUa-UGGCCGGCUaguucu -5'
24126 5' -54.2 NC_005263.2 + 32014 0.66 0.739762
Target:  5'- aGCugCGcgggugaACA-GCCGGCCGAUCu--- -3'
miRNA:   3'- gCGugGC-------UGUaUGGCCGGCUAGuucu -5'
24126 5' -54.2 NC_005263.2 + 1877 0.66 0.739762
Target:  5'- gCGCGCCuGGC---CCGgauuggcgggguuGCCGAUCAGGAa -3'
miRNA:   3'- -GCGUGG-CUGuauGGC-------------CGGCUAGUUCU- -5'
24126 5' -54.2 NC_005263.2 + 33222 0.66 0.730179
Target:  5'- cCGCACCuGCAc-UCGGCCGA-CAAGc -3'
miRNA:   3'- -GCGUGGcUGUauGGCCGGCUaGUUCu -5'
24126 5' -54.2 NC_005263.2 + 24642 0.66 0.719436
Target:  5'- aGCACUGACAgucgUACCGGgCGAg----- -3'
miRNA:   3'- gCGUGGCUGU----AUGGCCgGCUaguucu -5'
24126 5' -54.2 NC_005263.2 + 27386 0.66 0.719436
Target:  5'- gGCgGCCGGCGcgcugACCGGCUGcGUCAcGAc -3'
miRNA:   3'- gCG-UGGCUGUa----UGGCCGGC-UAGUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.