miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24142 3' -53.9 NC_005263.2 + 24942 0.66 0.762039
Target:  5'- -uGGCGGCg-GACgGCG-GUgCGCGGUu -3'
miRNA:   3'- cuUCGCCGaaUUGgCGCaCA-GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 46044 0.66 0.751501
Target:  5'- cGAGGaCGGCUacACCGCGaacuaccgCGCGGg -3'
miRNA:   3'- -CUUC-GCCGAauUGGCGCaca-----GCGUCg -5'
24142 3' -53.9 NC_005263.2 + 42648 0.66 0.748314
Target:  5'- cGAAGUGGCUgcGCaacgaacacguguuCGCGU-UCGCAGa -3'
miRNA:   3'- -CUUCGCCGAauUG--------------GCGCAcAGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 8227 0.66 0.740835
Target:  5'- -cAGcCGGCgaccccGACCacgGCGUgGUCGCAGUg -3'
miRNA:   3'- cuUC-GCCGaa----UUGG---CGCA-CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 19175 0.66 0.740835
Target:  5'- cGgcGCGGCUcgucGGCCGCGcGUgggaUGUGGCg -3'
miRNA:   3'- -CuuCGCCGAa---UUGGCGCaCA----GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 31022 0.66 0.740835
Target:  5'- --uGCGGCgaggcGCgGCGUG-CGCuGCu -3'
miRNA:   3'- cuuCGCCGaau--UGgCGCACaGCGuCG- -5'
24142 3' -53.9 NC_005263.2 + 32908 0.66 0.740835
Target:  5'- gGAAGC-GCUU-GCCGaCGUcgCGCGGCg -3'
miRNA:   3'- -CUUCGcCGAAuUGGC-GCAcaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 22056 0.66 0.740835
Target:  5'- ---cCGGCUguuGCCGCGacgaucccgggUGUCGUGGUg -3'
miRNA:   3'- cuucGCCGAau-UGGCGC-----------ACAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 28876 0.66 0.740835
Target:  5'- aGAAGcCGGCUuucgUGAgCGCGUccgaaaGCAGCu -3'
miRNA:   3'- -CUUC-GCCGA----AUUgGCGCAcag---CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 21199 0.66 0.730054
Target:  5'- --cGCGGCgcgggcgagUGGgUGCGUuucgagcgcGUCGCAGCc -3'
miRNA:   3'- cuuCGCCGa--------AUUgGCGCA---------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 38560 0.66 0.730054
Target:  5'- cAAGCcGCgagcGCCGCGUcgGUCGCuGCc -3'
miRNA:   3'- cUUCGcCGaau-UGGCGCA--CAGCGuCG- -5'
24142 3' -53.9 NC_005263.2 + 24115 0.66 0.730054
Target:  5'- --cGCGGCgccuuucgggUAGCCGCcgauuugcGUCGCGGUu -3'
miRNA:   3'- cuuCGCCGa---------AUUGGCGca------CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 20691 0.66 0.71479
Target:  5'- -cGGCGGCgcgaaaccugcGCCGguCGUGaCGCAGCc -3'
miRNA:   3'- cuUCGCCGaau--------UGGC--GCACaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 17041 0.66 0.708195
Target:  5'- -cAGCGGCUggUGGCgGCGUGaa-CGGCu -3'
miRNA:   3'- cuUCGCCGA--AUUGgCGCACagcGUCG- -5'
24142 3' -53.9 NC_005263.2 + 18537 0.66 0.708195
Target:  5'- aAAGCGGCUcgcGCCGCGUa--GgAGCc -3'
miRNA:   3'- cUUCGCCGAau-UGGCGCAcagCgUCG- -5'
24142 3' -53.9 NC_005263.2 + 21919 0.66 0.708195
Target:  5'- --cGCGGCc--GCCGCGcgGcCGCAGa -3'
miRNA:   3'- cuuCGCCGaauUGGCGCa-CaGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 31496 0.67 0.697143
Target:  5'- -cAGCGGCgcgAGCUGC-UGcUCGCGcGCg -3'
miRNA:   3'- cuUCGCCGaa-UUGGCGcAC-AGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 34080 0.67 0.686024
Target:  5'- --cGUGGCcgAACCGuCGccGUCGCuGCg -3'
miRNA:   3'- cuuCGCCGaaUUGGC-GCa-CAGCGuCG- -5'
24142 3' -53.9 NC_005263.2 + 2664 0.67 0.674851
Target:  5'- -cGGCGGCgacaccggcAGCCuGCaGUGUCGCgccGGCg -3'
miRNA:   3'- cuUCGCCGaa-------UUGG-CG-CACAGCG---UCG- -5'
24142 3' -53.9 NC_005263.2 + 37843 0.67 0.674851
Target:  5'- cGAcGCGGCguuucgcgAACCGCGUG-CGCc-- -3'
miRNA:   3'- -CUuCGCCGaa------UUGGCGCACaGCGucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.