miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24147 5' -55.7 NC_005263.2 + 14280 0.66 0.696407
Target:  5'- aCGCGCGCaUUGGGauaaGCGAugaaggaugaauACGUCGAc-- -3'
miRNA:   3'- -GCGCGCG-AGCUC----CGCU------------UGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 44671 0.66 0.688819
Target:  5'- gCGCGCGC-CGAagaagucGGCGGccauccugcgcgcacACGUCGGcgGCc -3'
miRNA:   3'- -GCGCGCGaGCU-------CCGCU---------------UGCAGCUa-UG- -5'
24147 5' -55.7 NC_005263.2 + 42136 0.66 0.685559
Target:  5'- uGCGCGa-CGAGGCGuguCGcgaGGUGCg -3'
miRNA:   3'- gCGCGCgaGCUCCGCuu-GCag-CUAUG- -5'
24147 5' -55.7 NC_005263.2 + 18268 0.66 0.685559
Target:  5'- uCGCagGCGUUCcGGGCGAugcgcuCGUCG-UGCg -3'
miRNA:   3'- -GCG--CGCGAGcUCCGCUu-----GCAGCuAUG- -5'
24147 5' -55.7 NC_005263.2 + 17536 0.66 0.663721
Target:  5'- gCGCGCGCagcggcgugaagUCGuuguGGGaGGACGUCGAgcaGCg -3'
miRNA:   3'- -GCGCGCG------------AGC----UCCgCUUGCAGCUa--UG- -5'
24147 5' -55.7 NC_005263.2 + 9211 0.66 0.663721
Target:  5'- gGCgGCGCUCGuacGGC--GCG-CGGUACg -3'
miRNA:   3'- gCG-CGCGAGCu--CCGcuUGCaGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 30432 0.66 0.652752
Target:  5'- gGUGCGgUCGAGcGCGAgcaGCGUgagCGcgGCg -3'
miRNA:   3'- gCGCGCgAGCUC-CGCU---UGCA---GCuaUG- -5'
24147 5' -55.7 NC_005263.2 + 23428 0.66 0.649458
Target:  5'- gCGCucauGCGCUCGAuguucGGCGAucggggugagugcuAUGUCGGUuACg -3'
miRNA:   3'- -GCG----CGCGAGCU-----CCGCU--------------UGCAGCUA-UG- -5'
24147 5' -55.7 NC_005263.2 + 44121 0.66 0.641765
Target:  5'- uGCGCuGCUCGGcGGCGcGCGccCGuUACa -3'
miRNA:   3'- gCGCG-CGAGCU-CCGCuUGCa-GCuAUG- -5'
24147 5' -55.7 NC_005263.2 + 25432 0.66 0.641765
Target:  5'- gCGCGUGCggugCGGGGUu--CGUCGGUu- -3'
miRNA:   3'- -GCGCGCGa---GCUCCGcuuGCAGCUAug -5'
24147 5' -55.7 NC_005263.2 + 12025 0.67 0.630768
Target:  5'- gGCGCGCUCaa-GCuuGCGcCGGUACa -3'
miRNA:   3'- gCGCGCGAGcucCGcuUGCaGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 32668 0.67 0.630768
Target:  5'- gGCGCgGgUCGGcGGCGA-UGUCGAcgUGCg -3'
miRNA:   3'- gCGCG-CgAGCU-CCGCUuGCAGCU--AUG- -5'
24147 5' -55.7 NC_005263.2 + 41555 0.67 0.630768
Target:  5'- gGCGCGC-CGuGGCGg----CGAUGCg -3'
miRNA:   3'- gCGCGCGaGCuCCGCuugcaGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 2653 0.67 0.619774
Target:  5'- uCGCGCcggGCUCGAGGUGcaGGCGUgcguugUGGUAg -3'
miRNA:   3'- -GCGCG---CGAGCUCCGC--UUGCA------GCUAUg -5'
24147 5' -55.7 NC_005263.2 + 42899 0.67 0.619774
Target:  5'- cCGCGCGCUCGcc-UGGACG-CGAgUGCg -3'
miRNA:   3'- -GCGCGCGAGCuccGCUUGCaGCU-AUG- -5'
24147 5' -55.7 NC_005263.2 + 36086 0.67 0.619774
Target:  5'- gGCGCaaGCUUGAGcGCGccgucGCGUUGAUGg -3'
miRNA:   3'- gCGCG--CGAGCUC-CGCu----UGCAGCUAUg -5'
24147 5' -55.7 NC_005263.2 + 5022 0.67 0.616477
Target:  5'- cCGcCGCGCUCGAcagccggcccGGCGGccgacuauuggccgACGUCGGc-- -3'
miRNA:   3'- -GC-GCGCGAGCU----------CCGCU--------------UGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 44769 0.67 0.608789
Target:  5'- cCGCGCGCggcgcCGGcGGCGcgcaGACGUUGAa-- -3'
miRNA:   3'- -GCGCGCGa----GCU-CCGC----UUGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 46946 0.67 0.608789
Target:  5'- aGCaaGC-CGAGGCGAucggauACG-CGGUGCa -3'
miRNA:   3'- gCGcgCGaGCUCCGCU------UGCaGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 3798 0.67 0.608789
Target:  5'- uGCGauCUgCGAGGCGAGCGcCGGa-- -3'
miRNA:   3'- gCGCgcGA-GCUCCGCUUGCaGCUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.