miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24151 5' -61.3 NC_005263.2 + 31357 0.66 0.397393
Target:  5'- -gGCGCGacuccauaaagcccuGCUGCUgCGGGcUGCuCGCGCGg -3'
miRNA:   3'- agCGCGU---------------CGACGG-GCUC-AUG-GCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 34066 0.66 0.393858
Target:  5'- cUCGaCGCGGC-GCCCGuGgccgaACCGuCGCc -3'
miRNA:   3'- -AGC-GCGUCGaCGGGCuCa----UGGC-GCGc -5'
24151 5' -61.3 NC_005263.2 + 19756 0.66 0.393858
Target:  5'- gCGCGCuGGCggcGCUCGug-GCCGUGUGg -3'
miRNA:   3'- aGCGCG-UCGa--CGGGCucaUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 6542 0.66 0.393858
Target:  5'- aCGCGCgaaAGCUcgcaucgccGCCaCGGcGcGCCGCGCGu -3'
miRNA:   3'- aGCGCG---UCGA---------CGG-GCU-CaUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 34016 0.66 0.393858
Target:  5'- cCGCGCAGCcgGUaccagCCGAcauggGCCGgCGCGg -3'
miRNA:   3'- aGCGCGUCGa-CG-----GGCUca---UGGC-GCGC- -5'
24151 5' -61.3 NC_005263.2 + 20958 0.66 0.385111
Target:  5'- cCGCGC-GCUGUCgGAcaucGCCGaCGCGg -3'
miRNA:   3'- aGCGCGuCGACGGgCUca--UGGC-GCGC- -5'
24151 5' -61.3 NC_005263.2 + 15763 0.66 0.385111
Target:  5'- aUUGCGgcgagcuccuuCAGCUGCUCGAcgaccACUGCGCGc -3'
miRNA:   3'- -AGCGC-----------GUCGACGGGCUca---UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 29656 0.66 0.385111
Target:  5'- cCGCGCGGCUGCUUca----CGCGCa -3'
miRNA:   3'- aGCGCGUCGACGGGcucaugGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 33133 0.66 0.385111
Target:  5'- aCGCGCAgaucGCUGCCgccagccaUGAGcGCgGCGCc -3'
miRNA:   3'- aGCGCGU----CGACGG--------GCUCaUGgCGCGc -5'
24151 5' -61.3 NC_005263.2 + 26055 0.66 0.385111
Target:  5'- aUCGuCGCGGCaacagCCGGGUugCGCGUc -3'
miRNA:   3'- -AGC-GCGUCGacg--GGCUCAugGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 14383 0.66 0.376494
Target:  5'- cCGgGCcGCUcGUCCGGGUGCgGCaGCa -3'
miRNA:   3'- aGCgCGuCGA-CGGGCUCAUGgCG-CGc -5'
24151 5' -61.3 NC_005263.2 + 12563 0.66 0.376494
Target:  5'- gCGcCGUAGC-GCCCGc---CCGCGCGc -3'
miRNA:   3'- aGC-GCGUCGaCGGGCucauGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 31553 0.66 0.368008
Target:  5'- -gGCGUcGCUGCCC-AG-GCgGCGCGc -3'
miRNA:   3'- agCGCGuCGACGGGcUCaUGgCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 22227 0.66 0.368008
Target:  5'- gUCGC-CGGCgucgGCCCG-GUugCGaCGCc -3'
miRNA:   3'- -AGCGcGUCGa---CGGGCuCAugGC-GCGc -5'
24151 5' -61.3 NC_005263.2 + 29746 0.66 0.368008
Target:  5'- aUCGUcuGCAGgUGCgCCGGGUuCUGCGgGu -3'
miRNA:   3'- -AGCG--CGUCgACG-GGCUCAuGGCGCgC- -5'
24151 5' -61.3 NC_005263.2 + 18771 0.66 0.368008
Target:  5'- gCGCGguGCUcGCgCUG-GUuaucgugcucGCCGCGCGc -3'
miRNA:   3'- aGCGCguCGA-CG-GGCuCA----------UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 704 0.66 0.368008
Target:  5'- aUCGUGCcGCcGCCCGcgAGcGCCGUgGCGa -3'
miRNA:   3'- -AGCGCGuCGaCGGGC--UCaUGGCG-CGC- -5'
24151 5' -61.3 NC_005263.2 + 9525 0.66 0.359654
Target:  5'- aUCGUGCGGCcgUGCgCGGcagcgACCGaCGCGg -3'
miRNA:   3'- -AGCGCGUCG--ACGgGCUca---UGGC-GCGC- -5'
24151 5' -61.3 NC_005263.2 + 17179 0.66 0.359654
Target:  5'- aUGCGCAGCUcGCggcguacgCCGuc-GCCGCGCu -3'
miRNA:   3'- aGCGCGUCGA-CG--------GGCucaUGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 6943 0.66 0.359654
Target:  5'- aUCGaCGaCGGCcGCCCac--GCCGCGCGa -3'
miRNA:   3'- -AGC-GC-GUCGaCGGGcucaUGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.