miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 3' -54.6 NC_005263.2 + 41584 0.66 0.751302
Target:  5'- -gCGCGuAUG-CGCGCCGCUUUcGCu -3'
miRNA:   3'- ugGCGCuUGCuGCGCGGUGAAAcUGc -5'
24160 3' -54.6 NC_005263.2 + 31067 0.66 0.751302
Target:  5'- cCCGuCGAucgucuuggccGCGACGCGCUGCUcgaGCGa -3'
miRNA:   3'- uGGC-GCU-----------UGCUGCGCGGUGAaacUGC- -5'
24160 3' -54.6 NC_005263.2 + 29924 0.66 0.751302
Target:  5'- -aUGCGGACGuaGCGCGCCGCa------ -3'
miRNA:   3'- ugGCGCUUGC--UGCGCGGUGaaacugc -5'
24160 3' -54.6 NC_005263.2 + 10261 0.66 0.751302
Target:  5'- gAUCGCGAuGCGcuucgcauCGCGCCGCUucgcauccUUGGCc -3'
miRNA:   3'- -UGGCGCU-UGCu-------GCGCGGUGA--------AACUGc -5'
24160 3' -54.6 NC_005263.2 + 18518 0.66 0.751302
Target:  5'- gAUCGCGAugGACGCGaUCAaagcGGCu -3'
miRNA:   3'- -UGGCGCUugCUGCGC-GGUgaaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 6036 0.66 0.751302
Target:  5'- uCCGCGAGC-ACGCcCCGuucgUUGGCGg -3'
miRNA:   3'- uGGCGCUUGcUGCGcGGUga--AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 46953 0.66 0.751302
Target:  5'- cGCCGCGAcgGGCGCaCUACUUUcGAgCGg -3'
miRNA:   3'- -UGGCGCUugCUGCGcGGUGAAA-CU-GC- -5'
24160 3' -54.6 NC_005263.2 + 35531 0.66 0.750259
Target:  5'- gACUGCGcccGGCGGCGCGCgggcgggCGCUacGGCGc -3'
miRNA:   3'- -UGGCGC---UUGCUGCGCG-------GUGAaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 7038 0.66 0.740817
Target:  5'- cGCCGaCGGAUGGCgcaucGCGCCAa--UGGCa -3'
miRNA:   3'- -UGGC-GCUUGCUG-----CGCGGUgaaACUGc -5'
24160 3' -54.6 NC_005263.2 + 33464 0.66 0.740817
Target:  5'- gACgGCGGACGAgCGCGUaugGCUgaucgacUGGCGa -3'
miRNA:   3'- -UGgCGCUUGCU-GCGCGg--UGAa------ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 21861 0.66 0.740817
Target:  5'- cGCCGCGuucGCGACG-GCCggcaagacGCUaucgaccgagUUGACGa -3'
miRNA:   3'- -UGGCGCu--UGCUGCgCGG--------UGA----------AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 12564 0.66 0.739762
Target:  5'- cGCCGU-AGCGcccgcccGCGCGCCGCcg-GGCGc -3'
miRNA:   3'- -UGGCGcUUGC-------UGCGCGGUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 30200 0.66 0.739762
Target:  5'- gGCCGUugaugcuGAuCGGCGCGCCGCcggucGACu -3'
miRNA:   3'- -UGGCG-------CUuGCUGCGCGGUGaaa--CUGc -5'
24160 3' -54.6 NC_005263.2 + 31558 0.66 0.73022
Target:  5'- cGCUGCccaGGCGGCGCGCCguGCUc-GACa -3'
miRNA:   3'- -UGGCGc--UUGCUGCGCGG--UGAaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 15620 0.66 0.73022
Target:  5'- cGCgGCGAAguuCGuGCGCGCCAggUUGAUc -3'
miRNA:   3'- -UGgCGCUU---GC-UGCGCGGUgaAACUGc -5'
24160 3' -54.6 NC_005263.2 + 47211 0.66 0.73022
Target:  5'- cCCGCcGGCGGCGacCGCCGCgcUGAaCGa -3'
miRNA:   3'- uGGCGcUUGCUGC--GCGGUGaaACU-GC- -5'
24160 3' -54.6 NC_005263.2 + 13764 0.66 0.73022
Target:  5'- cACgGCGAcaGGCGCGUCGCUUaaugGGCc -3'
miRNA:   3'- -UGgCGCUugCUGCGCGGUGAAa---CUGc -5'
24160 3' -54.6 NC_005263.2 + 18536 0.66 0.727021
Target:  5'- cACCGCGAGCGcguucaagaaguucGCGCaGCCcgGCaccggUGGCGu -3'
miRNA:   3'- -UGGCGCUUGC--------------UGCG-CGG--UGaa---ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 18799 0.66 0.719524
Target:  5'- cGCCGCGcGCGAUGCGCaUGCc--GACc -3'
miRNA:   3'- -UGGCGCuUGCUGCGCG-GUGaaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 37224 0.66 0.719524
Target:  5'- cGCCGCucACGACGCGCgC-CggUGcCGa -3'
miRNA:   3'- -UGGCGcuUGCUGCGCG-GuGaaACuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.