miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 3' -57.8 NC_005263.2 + 34729 0.66 0.522473
Target:  5'- -aUCGuGUCc---CGGCCGGUaGGCGACa -3'
miRNA:   3'- uaAGC-CGGauauGCCGGCCG-CCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 36167 0.66 0.522473
Target:  5'- --aCGGCCUGcGCGaCCGGU-GCGACc -3'
miRNA:   3'- uaaGCCGGAUaUGCcGGCCGcCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 15353 0.66 0.522473
Target:  5'- -gUCGGUCgcauUGC-GCCGcgcaaGCGGCAGCg -3'
miRNA:   3'- uaAGCCGGau--AUGcCGGC-----CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 46116 0.66 0.511882
Target:  5'- --gCGGCCUAggACaGUCGGUGaGCAAa -3'
miRNA:   3'- uaaGCCGGAUa-UGcCGGCCGC-CGUUg -5'
24169 3' -57.8 NC_005263.2 + 43076 0.66 0.511882
Target:  5'- -gUCGGCCgccg-GGCCGGCugucgagcGCGGCg -3'
miRNA:   3'- uaAGCCGGauaugCCGGCCGc-------CGUUG- -5'
24169 3' -57.8 NC_005263.2 + 43226 0.66 0.511882
Target:  5'- --gCGcGCgCUAcAUGGUgagCGGCGGCAGCg -3'
miRNA:   3'- uaaGC-CG-GAUaUGCCG---GCCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 13550 0.66 0.501381
Target:  5'- uUUCGGCacggUGUACGGgCG-CGGCAcgaGCg -3'
miRNA:   3'- uAAGCCGg---AUAUGCCgGCcGCCGU---UG- -5'
24169 3' -57.8 NC_005263.2 + 24785 0.66 0.501381
Target:  5'- --gCGGCgUcgGCGGCucgccgggcguCGGCGGCGc- -3'
miRNA:   3'- uaaGCCGgAuaUGCCG-----------GCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 38252 0.66 0.501381
Target:  5'- --aCGaGCUgaaucCGGCCGGCGGUGAa -3'
miRNA:   3'- uaaGC-CGGauau-GCCGGCCGCCGUUg -5'
24169 3' -57.8 NC_005263.2 + 35850 0.66 0.490976
Target:  5'- -gUCGGCaaaaaacaACGGCU-GCGGCAGCc -3'
miRNA:   3'- uaAGCCGgaua----UGCCGGcCGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 33947 0.66 0.490976
Target:  5'- --cCGGCCgc--CGGCCcgaagucgccaaGGCGGCcGCg -3'
miRNA:   3'- uaaGCCGGauauGCCGG------------CCGCCGuUG- -5'
24169 3' -57.8 NC_005263.2 + 4541 0.66 0.480672
Target:  5'- --gCGGCgCUGUGCcGaCGGCGGCAu- -3'
miRNA:   3'- uaaGCCG-GAUAUGcCgGCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 23315 0.66 0.480672
Target:  5'- --gCGGCCa----GGCgGGCGGCAc- -3'
miRNA:   3'- uaaGCCGGauaugCCGgCCGCCGUug -5'
24169 3' -57.8 NC_005263.2 + 24850 0.66 0.480672
Target:  5'- ---gGuGCCgGUGCGccaGCCGGCGGCuACg -3'
miRNA:   3'- uaagC-CGGaUAUGC---CGGCCGCCGuUG- -5'
24169 3' -57.8 NC_005263.2 + 14451 0.66 0.480672
Target:  5'- --gCGcGCCUcuuuCGaGCCGaGCGGCGGCa -3'
miRNA:   3'- uaaGC-CGGAuau-GC-CGGC-CGCCGUUG- -5'
24169 3' -57.8 NC_005263.2 + 10389 0.66 0.470475
Target:  5'- --aCGcGCCgggcCGGCCGGCGaGCGGg -3'
miRNA:   3'- uaaGC-CGGauauGCCGGCCGC-CGUUg -5'
24169 3' -57.8 NC_005263.2 + 3301 0.66 0.470475
Target:  5'- uUUCuuGCCUGggcGCGGCCGcGCGGUguucAACg -3'
miRNA:   3'- uAAGc-CGGAUa--UGCCGGC-CGCCG----UUG- -5'
24169 3' -57.8 NC_005263.2 + 5785 0.66 0.470475
Target:  5'- -gUCGGCaccuUGCGGCCGGUcGCu-- -3'
miRNA:   3'- uaAGCCGgau-AUGCCGGCCGcCGuug -5'
24169 3' -57.8 NC_005263.2 + 21904 0.67 0.458385
Target:  5'- --aCGGCCgccgcaucgcGCGGCCGccgcGCGGCcGCa -3'
miRNA:   3'- uaaGCCGGaua-------UGCCGGC----CGCCGuUG- -5'
24169 3' -57.8 NC_005263.2 + 14373 0.67 0.450418
Target:  5'- ---gGGCCcgAUGCcgGGCCGcucguccggguGCGGCAGCa -3'
miRNA:   3'- uaagCCGGa-UAUG--CCGGC-----------CGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.