miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24169 5' -64.2 NC_005263.2 + 47572 0.69 0.180216
Target:  5'- --aUGCGCCAccuGCgGGCGGCgcuuugcauuggagACGGUCa -3'
miRNA:   3'- gccACGCGGU---CGgCCGCCGa-------------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 47304 0.66 0.279383
Target:  5'- uCGGUccuGCGCCggcGGCCGGCacGCUcaaGGUCg -3'
miRNA:   3'- -GCCA---CGCGG---UCGGCCGc-CGAug-CCGG- -5'
24169 5' -64.2 NC_005263.2 + 47192 0.67 0.218555
Target:  5'- uCGaUGCGUCGacgaguaacccGCCGGCGGCgACcGCCg -3'
miRNA:   3'- -GCcACGCGGU-----------CGGCCGCCGaUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 46683 0.7 0.152678
Target:  5'- ---cGCGCgCAGCCaaGGCGGC-GCGcGCCg -3'
miRNA:   3'- gccaCGCG-GUCGG--CCGCCGaUGC-CGG- -5'
24169 5' -64.2 NC_005263.2 + 46169 0.7 0.133881
Target:  5'- cCGGcGuCGCCGguGCCGGCGcGCUcgugcagacgcGCGGCUg -3'
miRNA:   3'- -GCCaC-GCGGU--CGGCCGC-CGA-----------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 46083 0.66 0.259831
Target:  5'- gCGG-GCGCCGuuaugcGCCGcuGCGGauuuggcGCGGCCu -3'
miRNA:   3'- -GCCaCGCGGU------CGGC--CGCCga-----UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 45721 0.66 0.257938
Target:  5'- uGGUGCcCCGGCCuGCcgcucggugcugagGGUUggcACGGCCu -3'
miRNA:   3'- gCCACGcGGUCGGcCG--------------CCGA---UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 45653 0.66 0.286156
Target:  5'- aGGUGCuuGCCgAGCUGGCcGcGUUGC-GCCa -3'
miRNA:   3'- gCCACG--CGG-UCGGCCG-C-CGAUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 45453 0.66 0.283431
Target:  5'- cCGGUGuCGCCGccgauacGCCGGCaagcgcgaugaaccGcGCgguCGGCCu -3'
miRNA:   3'- -GCCAC-GCGGU-------CGGCCG--------------C-CGau-GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 45113 0.71 0.130387
Target:  5'- gCGGaUGCGCCGG-CGaGCGuCUACGGCa -3'
miRNA:   3'- -GCC-ACGCGGUCgGC-CGCcGAUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 44901 0.74 0.072046
Target:  5'- gCGG-GCGgCGGCCGGgcCGGCUcacCGGCCu -3'
miRNA:   3'- -GCCaCGCgGUCGGCC--GCCGAu--GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 44758 0.66 0.286156
Target:  5'- uGGUcgcucgaccgcGCGCgGcGCCGGCGGCgcgcagacgUugaacaccgcGCGGCCg -3'
miRNA:   3'- gCCA-----------CGCGgU-CGGCCGCCG---------A----------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 44173 0.67 0.224089
Target:  5'- ---gGCGCCAaccuGCCGGuCGGCcUGCcGCCa -3'
miRNA:   3'- gccaCGCGGU----CGGCC-GCCG-AUGcCGG- -5'
24169 5' -64.2 NC_005263.2 + 44118 0.77 0.041939
Target:  5'- aGGUGCGCU-GCuCGGCGGCgcgcgcccguuacaACGGCCu -3'
miRNA:   3'- gCCACGCGGuCG-GCCGCCGa-------------UGCCGG- -5'
24169 5' -64.2 NC_005263.2 + 42555 0.68 0.197575
Target:  5'- aCGGUcugcauucGCGCCAgGCCGuugcCGGCcACGGCa -3'
miRNA:   3'- -GCCA--------CGCGGU-CGGCc---GCCGaUGCCGg -5'
24169 5' -64.2 NC_005263.2 + 42157 0.69 0.183012
Target:  5'- aGGUGCGCCAguuGCCGGUGcacgacaugacGCUcACGcCCg -3'
miRNA:   3'- gCCACGCGGU---CGGCCGC-----------CGA-UGCcGG- -5'
24169 5' -64.2 NC_005263.2 + 42019 0.66 0.259831
Target:  5'- -aGUGCgGCCGGCCGcGCcaaGGCUuccuguCGGCg -3'
miRNA:   3'- gcCACG-CGGUCGGC-CG---CCGAu-----GCCGg -5'
24169 5' -64.2 NC_005263.2 + 39703 0.69 0.156714
Target:  5'- aCGGU-CGCCgAGgCGGCGcGCUuccugguCGGCCu -3'
miRNA:   3'- -GCCAcGCGG-UCgGCCGC-CGAu------GCCGG- -5'
24169 5' -64.2 NC_005263.2 + 39121 0.68 0.192612
Target:  5'- uGGUG-GCCGGCCagaucaacgucGGCGGCaccguguCGGCg -3'
miRNA:   3'- gCCACgCGGUCGG-----------CCGCCGau-----GCCGg -5'
24169 5' -64.2 NC_005263.2 + 38569 0.66 0.292362
Target:  5'- ---aGCGCCGcGUCGGUcGCUgccgcgcACGGCCg -3'
miRNA:   3'- gccaCGCGGU-CGGCCGcCGA-------UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.