miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24173 5' -59.4 NC_005263.2 + 8466 0.65 0.522722
Target:  5'- cGuuGCGGguaguugAUGUuCGUGCCGCUGUcGCc -3'
miRNA:   3'- cCggCGCU-------UGCAuGCGCGGCGGCA-CG- -5'
24173 5' -59.4 NC_005263.2 + 41919 0.66 0.513548
Target:  5'- cGGCUuccugaauGCGAAac-GCGCGCCGCUcaagGCg -3'
miRNA:   3'- -CCGG--------CGCUUgcaUGCGCGGCGGca--CG- -5'
24173 5' -59.4 NC_005263.2 + 20132 0.66 0.513548
Target:  5'- cGGCaagCGCGAcgGUACG-GCCGUCGcGCc -3'
miRNA:   3'- -CCG---GCGCUugCAUGCgCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 732 0.66 0.513548
Target:  5'- uGCuCGCGcgcauCGaACGCGCCGCCcauuucgGCg -3'
miRNA:   3'- cCG-GCGCuu---GCaUGCGCGGCGGca-----CG- -5'
24173 5' -59.4 NC_005263.2 + 164 0.66 0.513548
Target:  5'- aGCaCGCGAuccgcgcccgggGCGaGCcCGCUGCCcGUGCg -3'
miRNA:   3'- cCG-GCGCU------------UGCaUGcGCGGCGG-CACG- -5'
24173 5' -59.4 NC_005263.2 + 2627 0.66 0.513548
Target:  5'- aGGCCGacCGcGCGguucauCGCGCuUGCCG-GCg -3'
miRNA:   3'- -CCGGC--GCuUGCau----GCGCG-GCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 42819 0.66 0.507469
Target:  5'- cGCCGCaGACG-ACGUaacccacuggaugccGCUGCCG-GCa -3'
miRNA:   3'- cCGGCGcUUGCaUGCG---------------CGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 7038 0.66 0.503433
Target:  5'- cGCCGaCGGAUGgcgcauCGCGCCaaugGCagGUGCg -3'
miRNA:   3'- cCGGC-GCUUGCau----GCGCGG----CGg-CACG- -5'
24173 5' -59.4 NC_005263.2 + 43585 0.66 0.503433
Target:  5'- cGCCGCacgucgguagaGAAUGUGCGCGa---CGUGCu -3'
miRNA:   3'- cCGGCG-----------CUUGCAUGCGCggcgGCACG- -5'
24173 5' -59.4 NC_005263.2 + 44902 0.66 0.503433
Target:  5'- cGGCC-CGAucUGgcCGCGCuCGCCGacGCg -3'
miRNA:   3'- -CCGGcGCUu-GCauGCGCG-GCGGCa-CG- -5'
24173 5' -59.4 NC_005263.2 + 3164 0.66 0.503433
Target:  5'- uGGCCGgGcuuCGUgGCGCGgaauaaCUGCCGcUGCg -3'
miRNA:   3'- -CCGGCgCuu-GCA-UGCGC------GGCGGC-ACG- -5'
24173 5' -59.4 NC_005263.2 + 20497 0.66 0.502426
Target:  5'- aGGCCGUgcgcaucaucgacGAucGCGUaggauucgucgAUGUGCUGCCGcUGCu -3'
miRNA:   3'- -CCGGCG-------------CU--UGCA-----------UGCGCGGCGGC-ACG- -5'
24173 5' -59.4 NC_005263.2 + 21857 0.66 0.493405
Target:  5'- aGGUCGCc-GCGUuCGCGaCgGCCG-GCa -3'
miRNA:   3'- -CCGGCGcuUGCAuGCGC-GgCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 18647 0.66 0.493405
Target:  5'- cGCCGCuGGCGgua-CGCUGCCG-GCg -3'
miRNA:   3'- cCGGCGcUUGCaugcGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 44652 0.66 0.493405
Target:  5'- aGCUGCGccucgauGCGU-CGCGCgCGCCGa-- -3'
miRNA:   3'- cCGGCGCu------UGCAuGCGCG-GCGGCacg -5'
24173 5' -59.4 NC_005263.2 + 42753 0.66 0.493405
Target:  5'- aGGCaCGCGAuACGgcACGUGguuUCGCgGUGCu -3'
miRNA:   3'- -CCG-GCGCU-UGCa-UGCGC---GGCGgCACG- -5'
24173 5' -59.4 NC_005263.2 + 33590 0.66 0.493405
Target:  5'- aGCgGCGAACGgcgcCGCGCUGaUCGauaUGCu -3'
miRNA:   3'- cCGgCGCUUGCau--GCGCGGC-GGC---ACG- -5'
24173 5' -59.4 NC_005263.2 + 33679 0.66 0.493405
Target:  5'- cGGgCGCGAAUcUugGCGCaGCgCGgcgGCa -3'
miRNA:   3'- -CCgGCGCUUGcAugCGCGgCG-GCa--CG- -5'
24173 5' -59.4 NC_005263.2 + 19288 0.66 0.492407
Target:  5'- cGCCGCGugcGCGUcacggucaccgugACGCGCC-CgGaUGCg -3'
miRNA:   3'- cCGGCGCu--UGCA-------------UGCGCGGcGgC-ACG- -5'
24173 5' -59.4 NC_005263.2 + 39067 0.66 0.48347
Target:  5'- --aCGCGGACGUcguagccgGCuCGCCGUCGcGCg -3'
miRNA:   3'- ccgGCGCUUGCA--------UGcGCGGCGGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.