miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 3' -50.9 NC_005263.2 + 33810 0.66 0.899753
Target:  5'- -aGCGucgaCGGCAUGaCGAUCGCgcUGCa -3'
miRNA:   3'- aaCGCua--GCUGUGCaGCUAGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 24408 0.66 0.899753
Target:  5'- gUGCGGUC---AUGUCGAUCGCcucACg -3'
miRNA:   3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 32539 0.66 0.899753
Target:  5'- -gGCGAcugUCGGCAgGcCGGccacgCGCUUACu -3'
miRNA:   3'- aaCGCU---AGCUGUgCaGCUa----GCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 12680 0.66 0.899753
Target:  5'- -cGgGGUCGucguuCGCGUCGA--GCUUGCc -3'
miRNA:   3'- aaCgCUAGCu----GUGCAGCUagCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 28248 0.66 0.897572
Target:  5'- -cGCGcUCGccgugaccuuguucGCAuCGUCGAUCGCgcGCg -3'
miRNA:   3'- aaCGCuAGC--------------UGU-GCAGCUAGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 7378 0.66 0.892383
Target:  5'- -gGCGAUCGGguUGguguucuuugCGGUCGCgagUGCg -3'
miRNA:   3'- aaCGCUAGCUguGCa---------GCUAGCGa--AUG- -5'
24184 3' -50.9 NC_005263.2 + 9766 0.66 0.884723
Target:  5'- -cGcCGGUCGcCGCGUgcaCGGUCGCgcGCg -3'
miRNA:   3'- aaC-GCUAGCuGUGCA---GCUAGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 26040 0.66 0.884723
Target:  5'- -gGCGGUUGAgCuCGUCGAgcuUCGC-UGCg -3'
miRNA:   3'- aaCGCUAGCU-GuGCAGCU---AGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 39025 0.66 0.884723
Target:  5'- -gGcCGAUCGacccgaacugGCACGUCGAggCGC-UACa -3'
miRNA:   3'- aaC-GCUAGC----------UGUGCAGCUa-GCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 33903 0.66 0.884723
Target:  5'- -cGCGAaCGGCACGcCG-UCGCggaACg -3'
miRNA:   3'- aaCGCUaGCUGUGCaGCuAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 30208 0.66 0.876781
Target:  5'- aUGCuGAUCGGCGCGccgcCGGUCGaCUg-- -3'
miRNA:   3'- aACG-CUAGCUGUGCa---GCUAGC-GAaug -5'
24184 3' -50.9 NC_005263.2 + 6257 0.66 0.876781
Target:  5'- -cGCGGUCGuGC-CGUCGGgcaGCUUGa -3'
miRNA:   3'- aaCGCUAGC-UGuGCAGCUag-CGAAUg -5'
24184 3' -50.9 NC_005263.2 + 46091 0.66 0.876781
Target:  5'- aUGCGGcCGugACGUCGGguaucauccgCGCcgGCg -3'
miRNA:   3'- aACGCUaGCugUGCAGCUa---------GCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 19620 0.66 0.876781
Target:  5'- -aGCGAacgccUCGuACGCGUUGAUgGCUg-- -3'
miRNA:   3'- aaCGCU-----AGC-UGUGCAGCUAgCGAaug -5'
24184 3' -50.9 NC_005263.2 + 23406 0.66 0.876781
Target:  5'- aUGCGAUUGcC-CGUCGAUcaacgCGCUcaUGCg -3'
miRNA:   3'- aACGCUAGCuGuGCAGCUA-----GCGA--AUG- -5'
24184 3' -50.9 NC_005263.2 + 19111 0.66 0.865197
Target:  5'- cUGcCGGUCGGcCGCGcCGAgcgcaucgccgggCGCUUGCg -3'
miRNA:   3'- aAC-GCUAGCU-GUGCaGCUa------------GCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 15658 0.66 0.860072
Target:  5'- -cGCGAUCGuCGCGUCGGacacguucuuUcCGCUgACc -3'
miRNA:   3'- aaCGCUAGCuGUGCAGCU----------A-GCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 9728 0.66 0.860072
Target:  5'- cUUGCGcUCGuucgccacaGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- -AACGCuAGC---------UGU-GCAGCUAGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 30613 0.67 0.851322
Target:  5'- --uCGAUCGACGCGcCGcgCGCg--- -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 5857 0.67 0.833076
Target:  5'- gUGCGGUCGAa--GUCGAgcCGCagGCg -3'
miRNA:   3'- aACGCUAGCUgugCAGCUa-GCGaaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.