miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24204 3' -52.6 NC_005263.2 + 37663 0.65 0.854806
Target:  5'- cGACGUGACacGUGACaucccgccggaucaGGCguucguugaACGCGCGc -3'
miRNA:   3'- aCUGCACUGcaUAUUG--------------CCG---------UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 41155 0.66 0.843488
Target:  5'- cGGCGUucgcgcGGCGUG-GGCGGCcgucgucgauacguuGCGCGCu -3'
miRNA:   3'- aCUGCA------CUGCAUaUUGCCG---------------UGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 39068 0.66 0.839927
Target:  5'- -cGCG-GACGUcGUAGcCGGCucgccguCGCGCGg -3'
miRNA:   3'- acUGCaCUGCA-UAUU-GCCGu------GCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 18754 0.66 0.839927
Target:  5'- cGGCGcGAuCGUA-GGCGGCGCgGUGCu -3'
miRNA:   3'- aCUGCaCU-GCAUaUUGCCGUG-CGCGc -5'
24204 3' -52.6 NC_005263.2 + 4535 0.66 0.839031
Target:  5'- cGACGUGcgGCGcUGUgccGACGGCggcauugACGCGUa -3'
miRNA:   3'- aCUGCAC--UGC-AUA---UUGCCG-------UGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 13907 0.66 0.830865
Target:  5'- cGACGUGACGaacGACaGCGCGUccauGCu -3'
miRNA:   3'- aCUGCACUGCauaUUGcCGUGCG----CGc -5'
24204 3' -52.6 NC_005263.2 + 47448 0.66 0.830865
Target:  5'- cGAUGaGGCGUucgaucUGGcCGGCACGuCGCGu -3'
miRNA:   3'- aCUGCaCUGCAu-----AUU-GCCGUGC-GCGC- -5'
24204 3' -52.6 NC_005263.2 + 11803 0.66 0.830865
Target:  5'- gGACGUcGCGUGUcGCuGCAUGuCGUGg -3'
miRNA:   3'- aCUGCAcUGCAUAuUGcCGUGC-GCGC- -5'
24204 3' -52.6 NC_005263.2 + 41559 0.66 0.830865
Target:  5'- cGcCGUGGCGgcgauGCGaGCuuuCGCGCGu -3'
miRNA:   3'- aCuGCACUGCauau-UGC-CGu--GCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 9588 0.66 0.830865
Target:  5'- -uGCGUGcCGUcccAUuGCGGCA-GCGCGa -3'
miRNA:   3'- acUGCACuGCA---UAuUGCCGUgCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 22368 0.66 0.821585
Target:  5'- gGGCGgacagGuCGUGc-ACGGCGCGCaGCGc -3'
miRNA:   3'- aCUGCa----CuGCAUauUGCCGUGCG-CGC- -5'
24204 3' -52.6 NC_005263.2 + 38114 0.66 0.821585
Target:  5'- cUGGCGcgcaaGACGgcgaaccgGACGGCGUGCGCa -3'
miRNA:   3'- -ACUGCa----CUGCaua-----UUGCCGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 14246 0.66 0.819704
Target:  5'- gUGGCGUG-CGggcuggcuuGCGGCggccggcgcaACGCGCGc -3'
miRNA:   3'- -ACUGCACuGCauau-----UGCCG----------UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 27377 0.66 0.812099
Target:  5'- cGGCGcGGCG----GCGGCcgGCGCGCu -3'
miRNA:   3'- aCUGCaCUGCauauUGCCG--UGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 1258 0.66 0.812099
Target:  5'- cGGCaUGACGUGcuccuUGGCGcGCcgccugGCGCGCGu -3'
miRNA:   3'- aCUGcACUGCAU-----AUUGC-CG------UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 19395 0.66 0.812099
Target:  5'- cGGCGgcGCGcaguACGGCaACGCGCGc -3'
miRNA:   3'- aCUGCacUGCauauUGCCG-UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 17756 0.66 0.810178
Target:  5'- cGGCGgcagcGCGgccgcgcuCGGCACGCGCu -3'
miRNA:   3'- aCUGCac---UGCauauu---GCCGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 38505 0.67 0.806312
Target:  5'- cGACGcGAUGaucgcgcugccgcaaUGgGACGGCACGCaGCGc -3'
miRNA:   3'- aCUGCaCUGC---------------AUaUUGCCGUGCG-CGC- -5'
24204 3' -52.6 NC_005263.2 + 30904 0.67 0.802416
Target:  5'- -aGCGUGcACGaGUcgagcgcggcGACGGCguACGCGCGa -3'
miRNA:   3'- acUGCAC-UGCaUA----------UUGCCG--UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 24940 0.67 0.802416
Target:  5'- ---gGUGGCGgcgGACGGCgguGCGCGg -3'
miRNA:   3'- acugCACUGCauaUUGCCGug-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.