miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24212 5' -53.5 NC_005263.2 + 27788 0.65 0.804236
Target:  5'- aGCGGUGauCGUCGGGAcgGcggccgccaucgcgUUCGCGAa -3'
miRNA:   3'- cCGUCGC--GCAGCUCUuaC--------------AAGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 18586 0.65 0.804236
Target:  5'- cGGCcacugcuGGCGCGcCGAcGGAcgccgcagcggcGUUCGCGGCa -3'
miRNA:   3'- -CCG-------UCGCGCaGCU-CUUa-----------CAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 6508 0.66 0.797386
Target:  5'- -aCGGCGCGUUGAagccgGUcgugagcaUCGCGACg -3'
miRNA:   3'- ccGUCGCGCAGCUcuua-CA--------AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 30427 0.66 0.797386
Target:  5'- aGGuCGGUGCgGUCGAGcgcgagcagcGUGagCGCGGCg -3'
miRNA:   3'- -CC-GUCGCG-CAGCUCu---------UACaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 19188 0.66 0.797386
Target:  5'- cGGCcGCGCGU--GGGAUGUg-GCGAa -3'
miRNA:   3'- -CCGuCGCGCAgcUCUUACAagCGCUg -5'
24212 5' -53.5 NC_005263.2 + 19141 0.66 0.797386
Target:  5'- gGGCGcuuGCGCGUCGucguGAccGUgcauccgccggCGCGGCu -3'
miRNA:   3'- -CCGU---CGCGCAGCu---CUuaCAa----------GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 20791 0.66 0.791444
Target:  5'- cGuCGGCGCGUCGGGucgcgccGUGguauuucugcaggCGCGGCu -3'
miRNA:   3'- cC-GUCGCGCAGCUCu------UACaa-----------GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 5501 0.66 0.787448
Target:  5'- aGGgGGCGCGgCGAGGAUGgUCcuaagauCGGCu -3'
miRNA:   3'- -CCgUCGCGCaGCUCUUACaAGc------GCUG- -5'
24212 5' -53.5 NC_005263.2 + 14881 0.66 0.787448
Target:  5'- cGCAGCuuGUCGGccGAGUGcaggUGCGGCa -3'
miRNA:   3'- cCGUCGcgCAGCU--CUUACaa--GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 27920 0.66 0.78544
Target:  5'- cGGCGGCGCGUCGcccgg---CGCG-Cu -3'
miRNA:   3'- -CCGUCGCGCAGCucuuacaaGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 14050 0.66 0.777343
Target:  5'- gGGCGcCGCGUCGAGcgcauUGagCGCGcCg -3'
miRNA:   3'- -CCGUcGCGCAGCUCuu---ACaaGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 17810 0.66 0.777343
Target:  5'- uGGCaaGGCG-GcCGAGGAUGccgcgCGCGGCc -3'
miRNA:   3'- -CCG--UCGCgCaGCUCUUACaa---GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 35540 0.66 0.777343
Target:  5'- cGGCGGCGCG-CGGGc--GggCGCuACg -3'
miRNA:   3'- -CCGUCGCGCaGCUCuuaCaaGCGcUG- -5'
24212 5' -53.5 NC_005263.2 + 30901 0.66 0.777343
Target:  5'- uGCAGCGUGcaCGAGucgag-CGCGGCg -3'
miRNA:   3'- cCGUCGCGCa-GCUCuuacaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 45126 0.66 0.767082
Target:  5'- -cCAGCGCcagGUCGGGAAgg-UCGCaGACc -3'
miRNA:   3'- ccGUCGCG---CAGCUCUUacaAGCG-CUG- -5'
24212 5' -53.5 NC_005263.2 + 38409 0.66 0.762937
Target:  5'- cGCAcugucGCGCGUCGGGugcgccggCGUGACg -3'
miRNA:   3'- cCGU-----CGCGCAGCUCuuacaa--GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 19853 0.66 0.756678
Target:  5'- uGCAGCGCGUgcAGGug---CGCGACu -3'
miRNA:   3'- cCGUCGCGCAgcUCUuacaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 17812 0.66 0.75563
Target:  5'- cGGCcgcgcccGGCGCuGUCGcGGAcacGUUCGCGAa -3'
miRNA:   3'- -CCG-------UCGCG-CAGCuCUUa--CAAGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 6617 0.67 0.745081
Target:  5'- cGGCGGCGCGcUCGGcGcgGUcgagcagUCGCG-Cg -3'
miRNA:   3'- -CCGUCGCGC-AGCUcUuaCA-------AGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 17575 0.67 0.735486
Target:  5'- aGCAGCGCaUCGAGc-UGcUCGCGcaGCg -3'
miRNA:   3'- cCGUCGCGcAGCUCuuACaAGCGC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.