miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 3' -57.1 NC_005263.2 + 35020 0.66 0.635921
Target:  5'- -----cGC-CGCUGUCCGGcCUCGACGc -3'
miRNA:   3'- cgcgcaUGaGCGGCAGGCC-GAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 42507 0.66 0.625077
Target:  5'- cGCaCGgcCUCGCCGUgCGGaugccCGACGg -3'
miRNA:   3'- -CGcGCauGAGCGGCAgGCCga---GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 21227 0.66 0.625077
Target:  5'- aGCGCGU-CgcaGCCGUcaCCGGC--GACGa -3'
miRNA:   3'- -CGCGCAuGag-CGGCA--GGCCGagUUGC- -5'
24215 3' -57.1 NC_005263.2 + 34762 0.66 0.614239
Target:  5'- cCGaCGUAUUCGuUCG-CCGGCaUCAGCa -3'
miRNA:   3'- cGC-GCAUGAGC-GGCaGGCCG-AGUUGc -5'
24215 3' -57.1 NC_005263.2 + 27238 0.66 0.614239
Target:  5'- -aGCGUGaucgCGCCG-CCGGC-CGAUa -3'
miRNA:   3'- cgCGCAUga--GCGGCaGGCCGaGUUGc -5'
24215 3' -57.1 NC_005263.2 + 20795 0.66 0.61099
Target:  5'- gGCGCGU-CgggucgCGCCGUgguauuucugcaggCgCGGCUCGGCc -3'
miRNA:   3'- -CGCGCAuGa-----GCGGCA--------------G-GCCGAGUUGc -5'
24215 3' -57.1 NC_005263.2 + 43559 0.66 0.603416
Target:  5'- aCGCGUcaauGC-CGCCGUC-GGCaCAGCGc -3'
miRNA:   3'- cGCGCA----UGaGCGGCAGgCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 2635 0.66 0.592618
Target:  5'- cGCGCGguucaucgcGCUUGCCGgcguaUCGGCggCGACa -3'
miRNA:   3'- -CGCGCa--------UGAGCGGCa----GGCCGa-GUUGc -5'
24215 3' -57.1 NC_005263.2 + 17464 0.66 0.592618
Target:  5'- uCGCGUucgACgucaaCGCCGgCCGGCgCAGCa -3'
miRNA:   3'- cGCGCA---UGa----GCGGCaGGCCGaGUUGc -5'
24215 3' -57.1 NC_005263.2 + 6748 0.66 0.592618
Target:  5'- cGCGCGUcacguccaucGCgCGCCGggCGaGCUCGGCc -3'
miRNA:   3'- -CGCGCA----------UGaGCGGCagGC-CGAGUUGc -5'
24215 3' -57.1 NC_005263.2 + 19697 0.66 0.581851
Target:  5'- cGCGCGUGCcggCGCC-UCCGGggguaUCcGCa -3'
miRNA:   3'- -CGCGCAUGa--GCGGcAGGCCg----AGuUGc -5'
24215 3' -57.1 NC_005263.2 + 15200 0.66 0.581851
Target:  5'- cGCGCG-ACgucggcaagCGCU-UCCGGgUCAACGa -3'
miRNA:   3'- -CGCGCaUGa--------GCGGcAGGCCgAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 30794 0.66 0.581851
Target:  5'- uGCGCugcUGCUCGgCGgcgaCGuGCUCGGCGg -3'
miRNA:   3'- -CGCGc--AUGAGCgGCag--GC-CGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 39110 0.67 0.571125
Target:  5'- cGCGCG-ACUCGUgCG-CCGuGCgUCGGCGc -3'
miRNA:   3'- -CGCGCaUGAGCG-GCaGGC-CG-AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 11011 0.67 0.571125
Target:  5'- gGCGCGaaaUGCUCG--GUUCGGCUCAGg- -3'
miRNA:   3'- -CGCGC---AUGAGCggCAGGCCGAGUUgc -5'
24215 3' -57.1 NC_005263.2 + 39273 0.67 0.560447
Target:  5'- cGCGCGaUGCUugaucgcaCGCCGagCGGC-CGGCa -3'
miRNA:   3'- -CGCGC-AUGA--------GCGGCagGCCGaGUUGc -5'
24215 3' -57.1 NC_005263.2 + 20743 0.67 0.560447
Target:  5'- aGCGCGccUACUCGUCGgcagaCGGCUUuuACu -3'
miRNA:   3'- -CGCGC--AUGAGCGGCag---GCCGAGu-UGc -5'
24215 3' -57.1 NC_005263.2 + 8808 0.67 0.560447
Target:  5'- cGCGCGcGCaugCGCCuG-CCGGCcgcUCGGCGu -3'
miRNA:   3'- -CGCGCaUGa--GCGG-CaGGCCG---AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 19963 0.67 0.549825
Target:  5'- uCGCGUGCUCGgCG-CUGGC--AGCGu -3'
miRNA:   3'- cGCGCAUGAGCgGCaGGCCGagUUGC- -5'
24215 3' -57.1 NC_005263.2 + 43913 0.67 0.539267
Target:  5'- cGCGCGUACUgcuucacguucCGaCUGcCUGGCaugUCGACGg -3'
miRNA:   3'- -CGCGCAUGA-----------GC-GGCaGGCCG---AGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.