miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 5' -56.6 NC_005263.2 + 7220 0.66 0.592082
Target:  5'- aUCGCC--GGCGAcCAGaaGgcGCGCg -3'
miRNA:   3'- aAGCGGagCCGCUuGUCgaCauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 43057 0.66 0.585435
Target:  5'- -aCGCCgacgucggccaauagUCGGCcgccGGGcCGGCUGUcgAGCGCg -3'
miRNA:   3'- aaGCGG---------------AGCCG----CUU-GUCGACA--UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 32878 0.66 0.581011
Target:  5'- -gUGCC--GGCGGGCGGCgaguuucGUGGCGUc -3'
miRNA:   3'- aaGCGGagCCGCUUGUCGa------CAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 26875 0.66 0.581011
Target:  5'- cUUCGUCgcCGGUG-ACGGCUGcgacGCGCu -3'
miRNA:   3'- -AAGCGGa-GCCGCuUGUCGACau--CGCG- -5'
24215 5' -56.6 NC_005263.2 + 39046 0.66 0.579906
Target:  5'- -aCGUCgaGGCGcuACAGCUGUucgccgaggcgaaAGCGCg -3'
miRNA:   3'- aaGCGGagCCGCu-UGUCGACA-------------UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 45555 0.66 0.569982
Target:  5'- aUCGUCUCGcGUucgcggccugGAACAGCgGUcaGGCGUa -3'
miRNA:   3'- aAGCGGAGC-CG----------CUUGUCGaCA--UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 41353 0.66 0.559006
Target:  5'- cUCGCC-CGGCGcgcgauggacguGACGcGCgaguguguacgUGUGGCGCu -3'
miRNA:   3'- aAGCGGaGCCGC------------UUGU-CG-----------ACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 27716 0.66 0.559006
Target:  5'- -gCGCCUCgaauGGCGAguuguACGGUgucGGCGCg -3'
miRNA:   3'- aaGCGGAG----CCGCU-----UGUCGacaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 33582 0.66 0.559006
Target:  5'- aUCGaaaaagCGGCGAACGGCgcc-GCGCu -3'
miRNA:   3'- aAGCgga---GCCGCUUGUCGacauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 34396 0.66 0.54809
Target:  5'- -aCGUCggaCGGCGAcCAGCUGaAGCa- -3'
miRNA:   3'- aaGCGGa--GCCGCUuGUCGACaUCGcg -5'
24215 5' -56.6 NC_005263.2 + 25508 0.66 0.54809
Target:  5'- gUUCGUCauggUCGGCGucucgGGCUGgcuUGGCGCa -3'
miRNA:   3'- -AAGCGG----AGCCGCuug--UCGAC---AUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 27963 0.66 0.54809
Target:  5'- -gUGCC-CGGCGcGACGGCcGUAccgucGCGCu -3'
miRNA:   3'- aaGCGGaGCCGC-UUGUCGaCAU-----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 36948 0.66 0.54809
Target:  5'- gUCGCagcCGGCcAGCuaGGCUGcgGGCGCg -3'
miRNA:   3'- aAGCGga-GCCGcUUG--UCGACa-UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 16979 0.66 0.54809
Target:  5'- -gCGUUUCGGCGAAUAcCUG-AGCGa -3'
miRNA:   3'- aaGCGGAGCCGCUUGUcGACaUCGCg -5'
24215 5' -56.6 NC_005263.2 + 27366 0.66 0.537242
Target:  5'- -cCGCCagcgagCGGCGcGGCGGCggccGGCGCg -3'
miRNA:   3'- aaGCGGa-----GCCGC-UUGUCGaca-UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 19962 0.67 0.525396
Target:  5'- cUCGCgugCUCGGCGcuGGCAGC-GUgcaagacGGCGCc -3'
miRNA:   3'- aAGCG---GAGCCGC--UUGUCGaCA-------UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 10518 0.67 0.515778
Target:  5'- -gCGCgUCGGCGAGCugacGCacgaGcAGCGCa -3'
miRNA:   3'- aaGCGgAGCCGCUUGu---CGa---CaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 17408 0.67 0.515778
Target:  5'- -gCGCCU-GGCGGGCGG-UGUcgcaGGUGCa -3'
miRNA:   3'- aaGCGGAgCCGCUUGUCgACA----UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 16408 0.67 0.515778
Target:  5'- aUCGCgggugcgguaCUCGGCGu-CGGCgcUGGCGCg -3'
miRNA:   3'- aAGCG----------GAGCCGCuuGUCGacAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 38706 0.67 0.515778
Target:  5'- gUCGUacUUCGuCGAGCAGCUGgccgccGCGCu -3'
miRNA:   3'- aAGCG--GAGCcGCUUGUCGACau----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.