miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24221 5' -61.2 NC_005263.2 + 21415 0.66 0.402732
Target:  5'- uCCUGCuugCGGGCGGCuaccucgaagucGCCUGCcCGAa -3'
miRNA:   3'- cGGGCGca-GCUCGUCG------------CGGACGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 36644 0.66 0.393858
Target:  5'- --gUGCG-CG-GCAGCGCgaGCUCGGc -3'
miRNA:   3'- cggGCGCaGCuCGUCGCGgaCGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 1517 0.66 0.393858
Target:  5'- cGCaCgGCGUCGAugaGCAGCuuguGCC-GUUCGAu -3'
miRNA:   3'- -CG-GgCGCAGCU---CGUCG----CGGaCGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 4171 0.66 0.393858
Target:  5'- cGCgCCGCGcUCGugcugcAGCGGCGUgUGCUUc- -3'
miRNA:   3'- -CG-GGCGC-AGC------UCGUCGCGgACGAGcu -5'
24221 5' -61.2 NC_005263.2 + 9704 0.66 0.385111
Target:  5'- uGCCUGC-UCGAccgcuGCGGCGCgCUugcGCUCGu -3'
miRNA:   3'- -CGGGCGcAGCU-----CGUCGCG-GA---CGAGCu -5'
24221 5' -61.2 NC_005263.2 + 2637 0.66 0.385111
Target:  5'- -aUCGCGaUCG-GCAcguucGCGCCggGCUCGAg -3'
miRNA:   3'- cgGGCGC-AGCuCGU-----CGCGGa-CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 3988 0.66 0.385111
Target:  5'- gGCgCCGcCGcCGAGCAGCGCacCUGaC-CGAu -3'
miRNA:   3'- -CG-GGC-GCaGCUCGUCGCG--GAC-GaGCU- -5'
24221 5' -61.2 NC_005263.2 + 32769 0.66 0.382512
Target:  5'- aGCgCCGCGUCGggguucucggugucGGCccGCGCCUcgcgcaGCUCGc -3'
miRNA:   3'- -CG-GGCGCAGC--------------UCGu-CGCGGA------CGAGCu -5'
24221 5' -61.2 NC_005263.2 + 2316 0.66 0.379065
Target:  5'- cGCCCGCGUugaacuggcggaacgCGAGCAccgugcggccguuGCGCa-GCUgGAa -3'
miRNA:   3'- -CGGGCGCA---------------GCUCGU-------------CGCGgaCGAgCU- -5'
24221 5' -61.2 NC_005263.2 + 20044 0.66 0.376494
Target:  5'- uGCCgCGCGUUGAGUgcgacGCGCUgcuaacugaUGCUgGAa -3'
miRNA:   3'- -CGG-GCGCAGCUCGu----CGCGG---------ACGAgCU- -5'
24221 5' -61.2 NC_005263.2 + 26533 0.66 0.376494
Target:  5'- cGCCgGCGgCGAGCacgcGGCGCUggaacggccagUGCUCu- -3'
miRNA:   3'- -CGGgCGCaGCUCG----UCGCGG-----------ACGAGcu -5'
24221 5' -61.2 NC_005263.2 + 45945 0.66 0.368008
Target:  5'- uCUCGCGcCGGauCAGCGCCaggcGCUCGAa -3'
miRNA:   3'- cGGGCGCaGCUc-GUCGCGGa---CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 31065 0.66 0.368008
Target:  5'- cGCCCGuCGaUCGucuuggccGCGaCGCgCUGCUCGAg -3'
miRNA:   3'- -CGGGC-GC-AGCu-------CGUcGCG-GACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 40278 0.66 0.368008
Target:  5'- cGCCCGU-UCGcGGUuGCGCagaUGCUCGGc -3'
miRNA:   3'- -CGGGCGcAGC-UCGuCGCGg--ACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 47495 0.66 0.359653
Target:  5'- gGCCCGCuGUCGGGCAcUGCCUacGUUacUGAu -3'
miRNA:   3'- -CGGGCG-CAGCUCGUcGCGGA--CGA--GCU- -5'
24221 5' -61.2 NC_005263.2 + 1921 0.66 0.359653
Target:  5'- aGCCgCGCGUcugcaCGAGC-GCGCCgGCaccggCGAc -3'
miRNA:   3'- -CGG-GCGCA-----GCUCGuCGCGGaCGa----GCU- -5'
24221 5' -61.2 NC_005263.2 + 16604 0.66 0.358825
Target:  5'- gGCUCGCGcgCGAGCAgcagcucGCGCC-GCUgaCGGg -3'
miRNA:   3'- -CGGGCGCa-GCUCGU-------CGCGGaCGA--GCU- -5'
24221 5' -61.2 NC_005263.2 + 3224 0.66 0.351433
Target:  5'- cGCCCGCcccgaugacGcCGGGCAGCaUCUGCaCGAu -3'
miRNA:   3'- -CGGGCG---------CaGCUCGUCGcGGACGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 11743 0.67 0.346565
Target:  5'- aGCCCGCGUUGcGUaAGCGCgaCUGCcacaugcgcugauugUCGAc -3'
miRNA:   3'- -CGGGCGCAGCuCG-UCGCG--GACG---------------AGCU- -5'
24221 5' -61.2 NC_005263.2 + 651 0.67 0.338559
Target:  5'- cGCCCGUGaaCGugaaacgcaaggcacGGUAGUGCCcgUGCUCGGu -3'
miRNA:   3'- -CGGGCGCa-GC---------------UCGUCGCGG--ACGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.