miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 8937 0.66 0.735504
Target:  5'- gGUGAUCGgcauaccgaugcCGUCGCGCAUGucagcGUCGUu -3'
miRNA:   3'- -CACUAGC------------GCGGCGCGUGCua---UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 35636 0.66 0.724787
Target:  5'- ----gCGCGCCGC---CGGUAUCGUGu -3'
miRNA:   3'- cacuaGCGCGGCGcguGCUAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 19744 0.66 0.724787
Target:  5'- -cGAUCgGCGCuggCGCGCugGcgGcgcUCGUGg -3'
miRNA:   3'- caCUAG-CGCG---GCGCGugCuaU---AGCAC- -5'
24238 5' -54.6 NC_005263.2 + 10746 0.66 0.724787
Target:  5'- --aGUCGCGCaCGCGCAUGcgGcCGUc -3'
miRNA:   3'- cacUAGCGCG-GCGCGUGCuaUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 11516 0.66 0.713975
Target:  5'- cUGGUCGCGCgCGaugaaggcgGCGCGGUucGUCGUc -3'
miRNA:   3'- cACUAGCGCG-GCg--------CGUGCUA--UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 24619 0.66 0.703081
Target:  5'- aGUGGUaCGCGauGUccaucggauGCGCGAUGUCGUa -3'
miRNA:   3'- -CACUA-GCGCggCG---------CGUGCUAUAGCAc -5'
24238 5' -54.6 NC_005263.2 + 17401 0.66 0.703081
Target:  5'- -cGGccgCGCGCCugGCGgGCGGUGUCGc- -3'
miRNA:   3'- caCUa--GCGCGG--CGCgUGCUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 1560 0.66 0.703081
Target:  5'- -cGuUCGUGuuGCGCACGGUAUa--- -3'
miRNA:   3'- caCuAGCGCggCGCGUGCUAUAgcac -5'
24238 5' -54.6 NC_005263.2 + 34821 0.66 0.692115
Target:  5'- cUGGcUGCGCaCGCGCcaguCGGUGUCGg- -3'
miRNA:   3'- cACUaGCGCG-GCGCGu---GCUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 39031 0.66 0.692115
Target:  5'- -cGGUCGCGCUGUucgGCACGGg--CGa- -3'
miRNA:   3'- caCUAGCGCGGCG---CGUGCUauaGCac -5'
24238 5' -54.6 NC_005263.2 + 27135 0.67 0.68109
Target:  5'- -gGcgCGCaGCCGCGUcgGCGAUGUCc-- -3'
miRNA:   3'- caCuaGCG-CGGCGCG--UGCUAUAGcac -5'
24238 5' -54.6 NC_005263.2 + 11592 0.67 0.68109
Target:  5'- -aGGUCGCGCC-C-CGCGAUGaaGUGg -3'
miRNA:   3'- caCUAGCGCGGcGcGUGCUAUagCAC- -5'
24238 5' -54.6 NC_005263.2 + 11800 0.67 0.68109
Target:  5'- -cGAaCGCGCCggucgucacuucGCGCGCGAacgUGUCGa- -3'
miRNA:   3'- caCUaGCGCGG------------CGCGUGCU---AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 41349 0.67 0.68109
Target:  5'- -cGAgcUCGC-CCgGCGCGCGAUGgaCGUGa -3'
miRNA:   3'- caCU--AGCGcGG-CGCGUGCUAUa-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 47880 0.67 0.670017
Target:  5'- -cGAUCGCcuauagugGCUGCGUGCaGGUGUCGa- -3'
miRNA:   3'- caCUAGCG--------CGGCGCGUG-CUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 9754 0.67 0.670017
Target:  5'- -cGAUCGCGgUGCGCACcGAcuUCGc- -3'
miRNA:   3'- caCUAGCGCgGCGCGUG-CUauAGCac -5'
24238 5' -54.6 NC_005263.2 + 4856 0.67 0.658908
Target:  5'- -cGcgCGCGCCGUGC-CGAUGcCGcUGc -3'
miRNA:   3'- caCuaGCGCGGCGCGuGCUAUaGC-AC- -5'
24238 5' -54.6 NC_005263.2 + 38267 0.67 0.647773
Target:  5'- -cGAgcaagCGCGCCGCGC-CGu--UCGUc -3'
miRNA:   3'- caCUa----GCGCGGCGCGuGCuauAGCAc -5'
24238 5' -54.6 NC_005263.2 + 2235 0.67 0.636623
Target:  5'- -cGuUCGCGUaCGCGC-CGAUGUaCGUGu -3'
miRNA:   3'- caCuAGCGCG-GCGCGuGCUAUA-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 15180 0.67 0.636623
Target:  5'- aGUGAUCGacgcgaGCgCGcCGCGCGAcGUCGg- -3'
miRNA:   3'- -CACUAGCg-----CG-GC-GCGUGCUaUAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.