miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24260 3' -59.4 NC_005263.2 + 17638 0.65 0.498698
Target:  5'- gGCGCCGGAUGUGgCGCaacgcgaaggccgCCG-CGcUCAc- -3'
miRNA:   3'- -CGCGGCCUACGC-GCG-------------GGCaGC-AGUug -5'
24260 3' -59.4 NC_005263.2 + 45728 0.66 0.489627
Target:  5'- gGCGCCGucAUGgGUuacGCCgCGUCGaUCAACu -3'
miRNA:   3'- -CGCGGCc-UACgCG---CGG-GCAGC-AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 2300 0.66 0.489627
Target:  5'- uGCGCCGuGGccgGCaCGCCCG-CGUUGAa -3'
miRNA:   3'- -CGCGGC-CUa--CGcGCGGGCaGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 20720 0.66 0.489627
Target:  5'- cGCaGCCGGucaGCGCGCCgGcCGcCGccGCg -3'
miRNA:   3'- -CG-CGGCCua-CGCGCGGgCaGCaGU--UG- -5'
24260 3' -59.4 NC_005263.2 + 2271 0.66 0.489627
Target:  5'- aGCGCa----GCGCGUUCGcCGUCGGCa -3'
miRNA:   3'- -CGCGgccuaCGCGCGGGCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 19090 0.66 0.489627
Target:  5'- gGCGUCGcGGUGCGCaacgcacuGCCgGUCGgCcGCg -3'
miRNA:   3'- -CGCGGC-CUACGCG--------CGGgCAGCaGuUG- -5'
24260 3' -59.4 NC_005263.2 + 41821 0.66 0.489627
Target:  5'- aGCGa-GGAagUGCGCaGCCCGUUcccaGUCAAg -3'
miRNA:   3'- -CGCggCCU--ACGCG-CGGGCAG----CAGUUg -5'
24260 3' -59.4 NC_005263.2 + 8255 0.66 0.489627
Target:  5'- gGCaGCCGGGuaUGCGCGUUCGgaCGgccaCAGCg -3'
miRNA:   3'- -CG-CGGCCU--ACGCGCGGGCa-GCa---GUUG- -5'
24260 3' -59.4 NC_005263.2 + 37364 0.66 0.47964
Target:  5'- -gGCCGcAUGCGCGUgCGcgacugcaucUUGUCGACg -3'
miRNA:   3'- cgCGGCcUACGCGCGgGC----------AGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 24556 0.66 0.47964
Target:  5'- gGCGgCGGcgGCuGCGCCaCG--GUCGGCa -3'
miRNA:   3'- -CGCgGCCuaCG-CGCGG-GCagCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 37708 0.66 0.47964
Target:  5'- cGCGCCGGAcccGCuCGCCgGcCGgccCGGCg -3'
miRNA:   3'- -CGCGGCCUa--CGcGCGGgCaGCa--GUUG- -5'
24260 3' -59.4 NC_005263.2 + 12586 0.66 0.47964
Target:  5'- cCGCCGGGcgcagucgGCGCGCCag-UGUCAc- -3'
miRNA:   3'- cGCGGCCUa-------CGCGCGGgcaGCAGUug -5'
24260 3' -59.4 NC_005263.2 + 2654 0.66 0.478647
Target:  5'- cGCGCCGGGcucgaggUGCagGCGUgCGUUGUggUAGCu -3'
miRNA:   3'- -CGCGGCCU-------ACG--CGCGgGCAGCA--GUUG- -5'
24260 3' -59.4 NC_005263.2 + 20658 0.66 0.469753
Target:  5'- cGCGCCGcucGuCGCGgCCGUCGaaAGCg -3'
miRNA:   3'- -CGCGGCcuaC-GCGCgGGCAGCagUUG- -5'
24260 3' -59.4 NC_005263.2 + 18273 0.66 0.469753
Target:  5'- gGCGuuCCGGgcGaUGCGCUCGUCGUgcGCg -3'
miRNA:   3'- -CGC--GGCCuaC-GCGCGGGCAGCAguUG- -5'
24260 3' -59.4 NC_005263.2 + 30243 0.66 0.469753
Target:  5'- cGCGgCGaagcGUGCGCGgUaGUCGUCGGCg -3'
miRNA:   3'- -CGCgGCc---UACGCGCgGgCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 35393 0.66 0.459972
Target:  5'- aGCGCCGccuuUGCuGCGCCUGUgagagaCGUCGu- -3'
miRNA:   3'- -CGCGGCcu--ACG-CGCGGGCA------GCAGUug -5'
24260 3' -59.4 NC_005263.2 + 19286 0.66 0.459972
Target:  5'- aGCGCCGcGUGCGCGUCaCG--GUCAc- -3'
miRNA:   3'- -CGCGGCcUACGCGCGG-GCagCAGUug -5'
24260 3' -59.4 NC_005263.2 + 14092 0.66 0.459972
Target:  5'- aGCuCUGGAUcGCGCGCCgCGaCG-CAGCc -3'
miRNA:   3'- -CGcGGCCUA-CGCGCGG-GCaGCaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 30375 0.66 0.454156
Target:  5'- gGCGCCGaGUGCgagccccaugcggcgGCGCUCGUCGggaucgGACa -3'
miRNA:   3'- -CGCGGCcUACG---------------CGCGGGCAGCag----UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.