miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 1350 0.65 0.799594
Target:  5'- gCCGGUugcagaaucuuuuuGcCGGCGgcgGCCUugaaCGAGCGCa -3'
miRNA:   3'- -GGCCA--------------UaGCUGCaagCGGA----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 6633 0.66 0.791878
Target:  5'- gCGGUcgagcaGUCGcGCGUcggUCGCUUCacgugcgGGGCGCa -3'
miRNA:   3'- gGCCA------UAGC-UGCA---AGCGGAG-------CUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 18784 0.66 0.783073
Target:  5'- gCUGGuUAUCG-UGcUCGCCgcgcgCGAuGCGCa -3'
miRNA:   3'- -GGCC-AUAGCuGCaAGCGGa----GCU-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 10731 0.66 0.783073
Target:  5'- gCCaGGg--CGACGca-GaCUCGAGCGCa -3'
miRNA:   3'- -GG-CCauaGCUGCaagCgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36361 0.66 0.783073
Target:  5'- gCCaGGUGUCG-CG-UCGCCUaCGGuUGCa -3'
miRNA:   3'- -GG-CCAUAGCuGCaAGCGGA-GCUcGCG- -5'
24263 3' -54.4 NC_005263.2 + 38353 0.66 0.783073
Target:  5'- gCGGcgacCGGCGaaaugCGCCUCGAagGCGUg -3'
miRNA:   3'- gGCCaua-GCUGCaa---GCGGAGCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 26619 0.66 0.773143
Target:  5'- gCGGUaAUCGACGgugCGCCggauUUGccaguGGCGCc -3'
miRNA:   3'- gGCCA-UAGCUGCaa-GCGG----AGC-----UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29303 0.66 0.773143
Target:  5'- gCCGG-GUCGGCaugCGCaUCGcGCGCg -3'
miRNA:   3'- -GGCCaUAGCUGcaaGCGgAGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 35970 0.66 0.773143
Target:  5'- -aGGcgcUCGAC---CGCCUgGAGCGCg -3'
miRNA:   3'- ggCCau-AGCUGcaaGCGGAgCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 39040 0.66 0.76307
Target:  5'- aCUGGcacGUCGAggcgcuacagcUGUUCGCCgaggCGAaaGCGCg -3'
miRNA:   3'- -GGCCa--UAGCU-----------GCAAGCGGa---GCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 9222 0.66 0.76307
Target:  5'- aCGGUgccGUCGGCGUUCaGCacggCGAacGUGCc -3'
miRNA:   3'- gGCCA---UAGCUGCAAG-CGga--GCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 2477 0.66 0.76307
Target:  5'- gCCGcGUuguucgugacgAUCGACGc-UGCCUCGAgaucggGCGCg -3'
miRNA:   3'- -GGC-CA-----------UAGCUGCaaGCGGAGCU------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 22194 0.66 0.762055
Target:  5'- aCCGGUGcUGGCGUggcccggggcauuUCGUCgCGAcGUGCg -3'
miRNA:   3'- -GGCCAUaGCUGCA-------------AGCGGaGCU-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 30258 0.66 0.752863
Target:  5'- gCGGUagucGUCGGCGaagCGCUgcgcaaUCGGGcCGCg -3'
miRNA:   3'- gGCCA----UAGCUGCaa-GCGG------AGCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 20667 0.66 0.752863
Target:  5'- aUCGGgcUCGcagUGUUUGCC--GAGCGCg -3'
miRNA:   3'- -GGCCauAGCu--GCAAGCGGagCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36070 0.66 0.752863
Target:  5'- aCGGaagCGAUGUaccggCGCaagCUUGAGCGCg -3'
miRNA:   3'- gGCCauaGCUGCAa----GCG---GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29717 0.67 0.742535
Target:  5'- cCCGcGUGcCGGCGaagaacUUCGCCUUGAucgucugcagguGCGCc -3'
miRNA:   3'- -GGC-CAUaGCUGC------AAGCGGAGCU------------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 19585 0.67 0.736285
Target:  5'- cCCGGcGUCGAaccgaaguucaacuuCGUcgacaUCGCgCUCGAGCa- -3'
miRNA:   3'- -GGCCaUAGCU---------------GCA-----AGCG-GAGCUCGcg -5'
24263 3' -54.4 NC_005263.2 + 25932 0.67 0.732098
Target:  5'- aCCGGUucgccCGGCGcuggCGCaaugCGAGCGUc -3'
miRNA:   3'- -GGCCAua---GCUGCaa--GCGga--GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 5956 0.67 0.731048
Target:  5'- aCCGGcaacuggcgcaccUcgCGACa--CGCCUCGcGCGCa -3'
miRNA:   3'- -GGCC-------------AuaGCUGcaaGCGGAGCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.