miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 44014 0.65 0.227811
Target:  5'- uCGCGUcCGCuCGGCaaggguggcgacuuCGCCGCguuccgugGCGGCUGg -3'
miRNA:   3'- -GCGUA-GCGcGCCG--------------GCGGCG--------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38714 0.65 0.227811
Target:  5'- -uCGUCGagcaGCuGGCCGCCGCGCuGaaauucccgcagccGCCGg -3'
miRNA:   3'- gcGUAGCg---CG-CCGGCGGCGCG-C--------------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 26515 0.66 0.223944
Target:  5'- uGUugCGCGCGGCgucgaCGCCG-GCGGCg- -3'
miRNA:   3'- gCGuaGCGCGCCG-----GCGGCgCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 40058 0.66 0.223944
Target:  5'- aCGgAacUCGCGCGG-CGCCacgGCGCGGaCGc -3'
miRNA:   3'- -GCgU--AGCGCGCCgGCGG---CGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 39700 0.66 0.223944
Target:  5'- gGCGagCGCGagcuggaaaUGGCCGgCGCG-GGCCGc -3'
miRNA:   3'- gCGUa-GCGC---------GCCGGCgGCGCgCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 5220 0.66 0.223396
Target:  5'- gGCGagCGCGCGGCaCGCCauugaCGCGaucaggcGCCGu -3'
miRNA:   3'- gCGUa-GCGCGCCG-GCGGc----GCGC-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 32659 0.66 0.218517
Target:  5'- uCGCucauuUCGCGCuGCC-UCGCGCcguaccuguacGGCCGg -3'
miRNA:   3'- -GCGu----AGCGCGcCGGcGGCGCG-----------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27144 0.66 0.218517
Target:  5'- cCGCGUCgGCGauGuCCGacagCGCGCGcGCCGu -3'
miRNA:   3'- -GCGUAG-CGCgcC-GGCg---GCGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 32908 0.66 0.218517
Target:  5'- gGCGUCG-GCGGcCCGCUGaC-CGGCUu -3'
miRNA:   3'- gCGUAGCgCGCC-GGCGGC-GcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 23787 0.66 0.213202
Target:  5'- uGCGgaaUUGCGauGCCcguGCCG-GCGGCCGu -3'
miRNA:   3'- gCGU---AGCGCgcCGG---CGGCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 24309 0.66 0.213202
Target:  5'- gGC-UCGCGCGcGUCGCauCG-GCGGUCGu -3'
miRNA:   3'- gCGuAGCGCGC-CGGCG--GCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27984 0.66 0.213202
Target:  5'- -cCGUCGCGCuuGCCGUaacccUGCGCGGCg- -3'
miRNA:   3'- gcGUAGCGCGc-CGGCG-----GCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 3170 0.66 0.213202
Target:  5'- gGCuucGUgGCGCGgaauaacuGCCGCUgcgcgucggcgaGCGCGGCCa -3'
miRNA:   3'- gCG---UAgCGCGC--------CGGCGG------------CGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 9365 0.66 0.213202
Target:  5'- gGCGagCGCcgGCGGCUGCgggaauuucagCGCgGCGGCCa -3'
miRNA:   3'- gCGUa-GCG--CGCCGGCG-----------GCG-CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 23920 0.66 0.213202
Target:  5'- gCGCAUCGCuugGUGGCUGauGCuCGGCgGg -3'
miRNA:   3'- -GCGUAGCG---CGCCGGCggCGcGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 30451 0.66 0.213202
Target:  5'- aGCGUgaGCGCGGCgGCCuuCGCGuugcGCCa -3'
miRNA:   3'- gCGUAg-CGCGCCGgCGGc-GCGC----CGGc -5'
24284 3' -66.7 NC_005263.2 + 36944 0.66 0.213202
Target:  5'- gCGUGUCGCaGcCGGCCaGCUaggcugcggGCGCGGuuGu -3'
miRNA:   3'- -GCGUAGCG-C-GCCGG-CGG---------CGCGCCggC- -5'
24284 3' -66.7 NC_005263.2 + 44889 0.66 0.213202
Target:  5'- gGCGUcaucggggCGgGCGGCgGCCGgGcCGGCUc -3'
miRNA:   3'- gCGUA--------GCgCGCCGgCGGCgC-GCCGGc -5'
24284 3' -66.7 NC_005263.2 + 11791 0.66 0.213202
Target:  5'- uCGCAUgGCGCaGGaCGUCGCGUGucGCUGc -3'
miRNA:   3'- -GCGUAgCGCG-CCgGCGGCGCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 14244 0.66 0.208
Target:  5'- cCGUggCGUGCgGGCUgGCuUGCgGCGGCCGg -3'
miRNA:   3'- -GCGuaGCGCG-CCGG-CG-GCG-CGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.