miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24293 3' -55.4 NC_005263.2 + 14116 0.66 0.681995
Target:  5'- gGUCGcCGUCGCGaucguagccgcagCGGCcAGCGCg- -3'
miRNA:   3'- aCAGC-GCAGCGCga-----------GCCGuUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 33338 0.66 0.677585
Target:  5'- cGUgCGCGUCGgGCagcuuugcgacuUCGGCAuagUGCUGa -3'
miRNA:   3'- aCA-GCGCAGCgCG------------AGCCGUuu-GUGAC- -5'
24293 3' -55.4 NC_005263.2 + 8720 0.66 0.677585
Target:  5'- gGcCGCGuccaUCGCGUacUCGGCGAGCGg-- -3'
miRNA:   3'- aCaGCGC----AGCGCG--AGCCGUUUGUgac -5'
24293 3' -55.4 NC_005263.2 + 1294 0.66 0.677585
Target:  5'- cGUUGCGUuaCGCGaUCGGCGugaauuGCAgCUGa -3'
miRNA:   3'- aCAGCGCA--GCGCgAGCCGUu-----UGU-GAC- -5'
24293 3' -55.4 NC_005263.2 + 10891 0.66 0.677585
Target:  5'- --nCGCGUCGUGagCGGCGuaucgccGCGCUGg -3'
miRNA:   3'- acaGCGCAGCGCgaGCCGUu------UGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 33563 0.66 0.674273
Target:  5'- cGcCGUGUCGCGCgUCuacaucgaaaaagcGGCGAacggcgccGCGCUGa -3'
miRNA:   3'- aCaGCGCAGCGCG-AG--------------CCGUU--------UGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 24009 0.66 0.670956
Target:  5'- cGcCGCGcugcaaagugccgaCGCGCUCGGCA---GCUGg -3'
miRNA:   3'- aCaGCGCa-------------GCGCGAGCCGUuugUGAC- -5'
24293 3' -55.4 NC_005263.2 + 38002 0.66 0.666531
Target:  5'- gGUCGCGUCaCGgUCG-CGAACAUUc -3'
miRNA:   3'- aCAGCGCAGcGCgAGCcGUUUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 1562 0.66 0.666531
Target:  5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3'
miRNA:   3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5'
24293 3' -55.4 NC_005263.2 + 24208 0.66 0.666531
Target:  5'- -cUCGCGggCGCGCUCa-CGAGCGCg- -3'
miRNA:   3'- acAGCGCa-GCGCGAGccGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 36366 0.66 0.666531
Target:  5'- gUGUCGCGUCGC-CUaCGGUu-GCAa-- -3'
miRNA:   3'- -ACAGCGCAGCGcGA-GCCGuuUGUgac -5'
24293 3' -55.4 NC_005263.2 + 33099 0.66 0.655443
Target:  5'- cUGcUUGCG-CGCGUUCGGCGGAagaUGg -3'
miRNA:   3'- -AC-AGCGCaGCGCGAGCCGUUUgugAC- -5'
24293 3' -55.4 NC_005263.2 + 24141 0.66 0.655443
Target:  5'- -uUUGCGUCGCGgUUG-CGAACGCg- -3'
miRNA:   3'- acAGCGCAGCGCgAGCcGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 30241 0.66 0.655443
Target:  5'- -uUCGCGgcgaagCGUGCgcgguagucgUCGGCgAAGCGCUGc -3'
miRNA:   3'- acAGCGCa-----GCGCG----------AGCCG-UUUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 47771 0.66 0.644334
Target:  5'- cUGgCGCuuGUCGCGCUCuGGCAGuGCGgUGc -3'
miRNA:   3'- -ACaGCG--CAGCGCGAG-CCGUU-UGUgAC- -5'
24293 3' -55.4 NC_005263.2 + 6568 0.66 0.644334
Target:  5'- cGgCGCGccgCGCGUUUGcGCAGGCGCa- -3'
miRNA:   3'- aCaGCGCa--GCGCGAGC-CGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 15362 0.66 0.644334
Target:  5'- -aUUGCGcCGCGCaagCGGCAGcgcguacguuGCAUUGg -3'
miRNA:   3'- acAGCGCaGCGCGa--GCCGUU----------UGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 38413 0.66 0.644334
Target:  5'- cUGUCGCGcgucgggUGCGC-CGGCGuGACGCc- -3'
miRNA:   3'- -ACAGCGCa------GCGCGaGCCGU-UUGUGac -5'
24293 3' -55.4 NC_005263.2 + 1168 0.66 0.644334
Target:  5'- cGUCGCGgcgacuugugccUCGUGCUgcgCGGCA-GCGCg- -3'
miRNA:   3'- aCAGCGC------------AGCGCGA---GCCGUuUGUGac -5'
24293 3' -55.4 NC_005263.2 + 40284 0.66 0.633214
Target:  5'- -uUCGCGguugCGCagauGCUCGGCGuauAACGCg- -3'
miRNA:   3'- acAGCGCa---GCG----CGAGCCGU---UUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.