Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24293 | 3' | -55.4 | NC_005263.2 | + | 14116 | 0.66 | 0.681995 |
Target: 5'- gGUCGcCGUCGCGaucguagccgcagCGGCcAGCGCg- -3' miRNA: 3'- aCAGC-GCAGCGCga-----------GCCGuUUGUGac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 33338 | 0.66 | 0.677585 |
Target: 5'- cGUgCGCGUCGgGCagcuuugcgacuUCGGCAuagUGCUGa -3' miRNA: 3'- aCA-GCGCAGCgCG------------AGCCGUuu-GUGAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 8720 | 0.66 | 0.677585 |
Target: 5'- gGcCGCGuccaUCGCGUacUCGGCGAGCGg-- -3' miRNA: 3'- aCaGCGC----AGCGCG--AGCCGUUUGUgac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 1294 | 0.66 | 0.677585 |
Target: 5'- cGUUGCGUuaCGCGaUCGGCGugaauuGCAgCUGa -3' miRNA: 3'- aCAGCGCA--GCGCgAGCCGUu-----UGU-GAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 10891 | 0.66 | 0.677585 |
Target: 5'- --nCGCGUCGUGagCGGCGuaucgccGCGCUGg -3' miRNA: 3'- acaGCGCAGCGCgaGCCGUu------UGUGAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 33563 | 0.66 | 0.674273 |
Target: 5'- cGcCGUGUCGCGCgUCuacaucgaaaaagcGGCGAacggcgccGCGCUGa -3' miRNA: 3'- aCaGCGCAGCGCG-AG--------------CCGUU--------UGUGAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 24009 | 0.66 | 0.670956 |
Target: 5'- cGcCGCGcugcaaagugccgaCGCGCUCGGCA---GCUGg -3' miRNA: 3'- aCaGCGCa-------------GCGCGAGCCGUuugUGAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 38002 | 0.66 | 0.666531 |
Target: 5'- gGUCGCGUCaCGgUCG-CGAACAUUc -3' miRNA: 3'- aCAGCGCAGcGCgAGCcGUUUGUGAc -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 1562 | 0.66 | 0.666531 |
Target: 5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3' miRNA: 3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 24208 | 0.66 | 0.666531 |
Target: 5'- -cUCGCGggCGCGCUCa-CGAGCGCg- -3' miRNA: 3'- acAGCGCa-GCGCGAGccGUUUGUGac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 36366 | 0.66 | 0.666531 |
Target: 5'- gUGUCGCGUCGC-CUaCGGUu-GCAa-- -3' miRNA: 3'- -ACAGCGCAGCGcGA-GCCGuuUGUgac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 33099 | 0.66 | 0.655443 |
Target: 5'- cUGcUUGCG-CGCGUUCGGCGGAagaUGg -3' miRNA: 3'- -AC-AGCGCaGCGCGAGCCGUUUgugAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 24141 | 0.66 | 0.655443 |
Target: 5'- -uUUGCGUCGCGgUUG-CGAACGCg- -3' miRNA: 3'- acAGCGCAGCGCgAGCcGUUUGUGac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 30241 | 0.66 | 0.655443 |
Target: 5'- -uUCGCGgcgaagCGUGCgcgguagucgUCGGCgAAGCGCUGc -3' miRNA: 3'- acAGCGCa-----GCGCG----------AGCCG-UUUGUGAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 47771 | 0.66 | 0.644334 |
Target: 5'- cUGgCGCuuGUCGCGCUCuGGCAGuGCGgUGc -3' miRNA: 3'- -ACaGCG--CAGCGCGAG-CCGUU-UGUgAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 6568 | 0.66 | 0.644334 |
Target: 5'- cGgCGCGccgCGCGUUUGcGCAGGCGCa- -3' miRNA: 3'- aCaGCGCa--GCGCGAGC-CGUUUGUGac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 15362 | 0.66 | 0.644334 |
Target: 5'- -aUUGCGcCGCGCaagCGGCAGcgcguacguuGCAUUGg -3' miRNA: 3'- acAGCGCaGCGCGa--GCCGUU----------UGUGAC- -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 38413 | 0.66 | 0.644334 |
Target: 5'- cUGUCGCGcgucgggUGCGC-CGGCGuGACGCc- -3' miRNA: 3'- -ACAGCGCa------GCGCGaGCCGU-UUGUGac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 1168 | 0.66 | 0.644334 |
Target: 5'- cGUCGCGgcgacuugugccUCGUGCUgcgCGGCA-GCGCg- -3' miRNA: 3'- aCAGCGC------------AGCGCGA---GCCGUuUGUGac -5' |
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24293 | 3' | -55.4 | NC_005263.2 | + | 40284 | 0.66 | 0.633214 |
Target: 5'- -uUCGCGguugCGCagauGCUCGGCGuauAACGCg- -3' miRNA: 3'- acAGCGCa---GCG----CGAGCCGU---UUGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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