miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 16988 0.66 0.68109
Target:  5'- cGAAUACCUgAGCGaCGCGacc-GCCGa -3'
miRNA:   3'- -CUUGUGGAgUUGC-GCGCgcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 12561 0.66 0.68109
Target:  5'- cGGCGCCgUAGCGCccgcccGCGCGccGCCGg -3'
miRNA:   3'- cUUGUGGaGUUGCG------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 22017 0.66 0.68109
Target:  5'- cGAGCAgCUCGACGCGCucuauGCGcacgUGCg-- -3'
miRNA:   3'- -CUUGUgGAGUUGCGCG-----CGCa---ACGgca -5'
24296 3' -55.4 NC_005263.2 + 3940 0.66 0.68109
Target:  5'- uAGCGCCUCGcACGCGCcagccaGCGagccuggcagGCCGUu -3'
miRNA:   3'- cUUGUGGAGU-UGCGCG------CGCaa--------CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 21558 0.66 0.68109
Target:  5'- aGAGCACUggccguucCAGCGC-CGCGUgcucGCCGc -3'
miRNA:   3'- -CUUGUGGa-------GUUGCGcGCGCAa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 9700 0.66 0.68109
Target:  5'- -cGCACC-CGACGCGCGacaGUgcGUCGa -3'
miRNA:   3'- cuUGUGGaGUUGCGCGCg--CAa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 3708 0.66 0.68109
Target:  5'- cGACGCCaaugcCGCGCGCGUUGauaCGc -3'
miRNA:   3'- cUUGUGGaguu-GCGCGCGCAACg--GCa -5'
24296 3' -55.4 NC_005263.2 + 34916 0.66 0.670017
Target:  5'- cGAAUgucgACCUgUGAUGCGCGCGgaGCUGa -3'
miRNA:   3'- -CUUG----UGGA-GUUGCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 29065 0.66 0.670017
Target:  5'- -cGCGuCCUCGGgGCgGCGCGcaucgGCCGUc -3'
miRNA:   3'- cuUGU-GGAGUUgCG-CGCGCaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 20352 0.66 0.670017
Target:  5'- -cGCACCUCgGGgGCGCGCaugGCUGa -3'
miRNA:   3'- cuUGUGGAG-UUgCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 35914 0.66 0.670017
Target:  5'- aGACACaggcgacCAugGCGaCGCGcgUGCCGUu -3'
miRNA:   3'- cUUGUGga-----GUugCGC-GCGCa-ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 41603 0.66 0.658908
Target:  5'- cGACcgGCUUCAACGCGC-CGUUcGUCGa -3'
miRNA:   3'- cUUG--UGGAGUUGCGCGcGCAA-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 10295 0.66 0.658908
Target:  5'- uGAGCGCCg-GAUGCGCGCcc-GUCGUc -3'
miRNA:   3'- -CUUGUGGagUUGCGCGCGcaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 16572 0.66 0.658908
Target:  5'- cGACGCCaaggcCGGCgGCGaCGCGUUcGCCGg -3'
miRNA:   3'- cUUGUGGa----GUUG-CGC-GCGCAA-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 2263 0.66 0.647773
Target:  5'- --gUugUUCgAGCGCaGCGCGUUcGCCGUc -3'
miRNA:   3'- cuuGugGAG-UUGCG-CGCGCAA-CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 10658 0.66 0.647773
Target:  5'- uGGACGCCgcgCAGacCGCGCGC---GCCGa -3'
miRNA:   3'- -CUUGUGGa--GUU--GCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 35986 0.66 0.647773
Target:  5'- gGAGCGCgCguaAugGCGCGCGc-GCCGc -3'
miRNA:   3'- -CUUGUG-Gag-UugCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 47132 0.66 0.647773
Target:  5'- aAGCGCCgucCGACGCGCagGCGaccGCCGc -3'
miRNA:   3'- cUUGUGGa--GUUGCGCG--CGCaa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 10136 0.66 0.636623
Target:  5'- --cCACCuUCAGCGCcagccgGCGCGgcaucgGCCGg -3'
miRNA:   3'- cuuGUGG-AGUUGCG------CGCGCaa----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 15556 0.66 0.636623
Target:  5'- cGGCGCa--GACGCGCGCGcugaacGCCGa -3'
miRNA:   3'- cUUGUGgagUUGCGCGCGCaa----CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.