miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 5' -56.2 NC_005263.2 + 17143 0.66 0.642833
Target:  5'- --uCGGCGAaGCGgucgaCGUCgCGGUGUUCGg -3'
miRNA:   3'- acuGCCGUUaCGC-----GUAG-GCCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 8258 0.66 0.642833
Target:  5'- aGcCGGguAUGCGCGUUCGGacgGC-Ca -3'
miRNA:   3'- aCuGCCguUACGCGUAGGCCa--CGaGc -5'
24296 5' -56.2 NC_005263.2 + 46293 0.66 0.640617
Target:  5'- gGACGGCg--GCaGCAUCCaGGaacugacgaucgGCUCGa -3'
miRNA:   3'- aCUGCCGuuaCG-CGUAGG-CCa-----------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 28790 0.66 0.631751
Target:  5'- cUGGuuGCcuUGCGCAUCCGG-GCgCGu -3'
miRNA:   3'- -ACUgcCGuuACGCGUAGGCCaCGaGC- -5'
24296 5' -56.2 NC_005263.2 + 42954 0.66 0.631751
Target:  5'- -cACGGCcc-GUGCGUCCGG-GCUg- -3'
miRNA:   3'- acUGCCGuuaCGCGUAGGCCaCGAgc -5'
24296 5' -56.2 NC_005263.2 + 615 0.66 0.62067
Target:  5'- ---aGGCAGUGCccgacaGCGggCCGGUGCUg- -3'
miRNA:   3'- acugCCGUUACG------CGUa-GGCCACGAgc -5'
24296 5' -56.2 NC_005263.2 + 17907 0.66 0.62067
Target:  5'- cGGCGcGCAGaucgGCGCGccCCGG-GCUCc -3'
miRNA:   3'- aCUGC-CGUUa---CGCGUa-GGCCaCGAGc -5'
24296 5' -56.2 NC_005263.2 + 46173 0.66 0.62067
Target:  5'- gGGCGGCGA---GUGUCCGGUaccagcggacacGCUCGu -3'
miRNA:   3'- aCUGCCGUUacgCGUAGGCCA------------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 14174 0.66 0.62067
Target:  5'- cGGCGGCcgguGUGCGCGagCUGcGUGCg-- -3'
miRNA:   3'- aCUGCCGu---UACGCGUa-GGC-CACGagc -5'
24296 5' -56.2 NC_005263.2 + 22362 0.66 0.62067
Target:  5'- cGGCGGCAAgaaaGCGUGUCgauCGGcgGCaUCGg -3'
miRNA:   3'- aCUGCCGUUa---CGCGUAG---GCCa-CG-AGC- -5'
24296 5' -56.2 NC_005263.2 + 27670 0.66 0.614025
Target:  5'- cGGCGGCAAgcacggccgccuucuUGUGCGcgCCGGcGC-CGg -3'
miRNA:   3'- aCUGCCGUU---------------ACGCGUa-GGCCaCGaGC- -5'
24296 5' -56.2 NC_005263.2 + 8808 0.66 0.609599
Target:  5'- -cGCGcGCGcAUGCGCcugCCGGccGCUCGg -3'
miRNA:   3'- acUGC-CGU-UACGCGua-GGCCa-CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 23618 0.66 0.609599
Target:  5'- cGGCGGCAccGUGgucgagCCGGaGCUCGu -3'
miRNA:   3'- aCUGCCGUuaCGCgua---GGCCaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 17534 0.66 0.608493
Target:  5'- -cACGGCAaacgguGUGCGCGaauccggUCUGGUGCccUCa -3'
miRNA:   3'- acUGCCGU------UACGCGU-------AGGCCACG--AGc -5'
24296 5' -56.2 NC_005263.2 + 10400 0.66 0.598547
Target:  5'- cGGcCGGCGA-GCGgGUCCGGcGCgCGu -3'
miRNA:   3'- aCU-GCCGUUaCGCgUAGGCCaCGaGC- -5'
24296 5' -56.2 NC_005263.2 + 17050 0.66 0.587525
Target:  5'- gUGGCGGC-GUGaacgGCuUCaugaaGGUGCUCGa -3'
miRNA:   3'- -ACUGCCGuUACg---CGuAGg----CCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 18895 0.67 0.576541
Target:  5'- cGACGGCAAauaCGCG-CCGGccUGCgUCGa -3'
miRNA:   3'- aCUGCCGUUac-GCGUaGGCC--ACG-AGC- -5'
24296 5' -56.2 NC_005263.2 + 13653 0.67 0.569972
Target:  5'- aUGACGGUcGUGCGCA-CCGcGUcgcgaaugcgcaggcGUUCGa -3'
miRNA:   3'- -ACUGCCGuUACGCGUaGGC-CA---------------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 5873 0.67 0.565602
Target:  5'- -cGCGGuCGAUGCGCAUCCcaUGCa-- -3'
miRNA:   3'- acUGCC-GUUACGCGUAGGccACGagc -5'
24296 5' -56.2 NC_005263.2 + 27382 0.67 0.554719
Target:  5'- cGGCGGCGGccgGCGCGcugaCCGGcUGCgUCa -3'
miRNA:   3'- aCUGCCGUUa--CGCGUa---GGCC-ACG-AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.