miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24310 3' -58.6 NC_005263.2 + 30041 0.66 0.536317
Target:  5'- cGUGACGaUCGaGUgGUGcGUCAGGAUGGCu -3'
miRNA:   3'- -CACUGC-GGC-CGgUGC-CAGUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 4662 0.66 0.536317
Target:  5'- -gGGCagGCCGGCgCGCGGgucuuucgUCAGGAucgugccguCGGCg -3'
miRNA:   3'- caCUG--CGGCCG-GUGCC--------AGUUCU---------GCCG- -5'
24310 3' -58.6 NC_005263.2 + 17153 0.66 0.536317
Target:  5'- -cGACGUCGG-CACGGcCGAGAa-GCc -3'
miRNA:   3'- caCUGCGGCCgGUGCCaGUUCUgcCG- -5'
24310 3' -58.6 NC_005263.2 + 26951 0.66 0.536317
Target:  5'- aUGACGUCGcuGCCGuCGGUCGuGAUaGCg -3'
miRNA:   3'- cACUGCGGC--CGGU-GCCAGUuCUGcCG- -5'
24310 3' -58.6 NC_005263.2 + 19057 0.66 0.536317
Target:  5'- --cGCGUCgugcuauccaaGGCCGCGcGUCAGuACGGCg -3'
miRNA:   3'- cacUGCGG-----------CCGGUGC-CAGUUcUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 33994 0.66 0.536317
Target:  5'- -cGAgGCCGGCCGuguUGGcugCGucGCGGCg -3'
miRNA:   3'- caCUgCGGCCGGU---GCCa--GUucUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 42019 0.66 0.536317
Target:  5'- aGUG-CgGCCGGCCGCGc-CAAGGCuuccugucGGCg -3'
miRNA:   3'- -CACuG-CGGCCGGUGCcaGUUCUG--------CCG- -5'
24310 3' -58.6 NC_005263.2 + 46500 0.66 0.536317
Target:  5'- -cGAC-CCGGauGCGGUCGAaaACGGCg -3'
miRNA:   3'- caCUGcGGCCggUGCCAGUUc-UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 5032 0.66 0.525877
Target:  5'- -cGACaGCCGGCCcgGCGGcCGAcuauuggccgacGuCGGCg -3'
miRNA:   3'- caCUG-CGGCCGG--UGCCaGUU------------CuGCCG- -5'
24310 3' -58.6 NC_005263.2 + 35249 0.66 0.525877
Target:  5'- -cGcACGCCGGCCccaucgaauACGGgcugCccGAUGGCg -3'
miRNA:   3'- caC-UGCGGCCGG---------UGCCa---GuuCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 7270 0.66 0.525877
Target:  5'- -cGAUGUCGGUCG-GGaCGAGcgGCGGCa -3'
miRNA:   3'- caCUGCGGCCGGUgCCaGUUC--UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 17396 0.66 0.515516
Target:  5'- -cGGCG-CGGCCGCGcGcCuggcGGGCGGUg -3'
miRNA:   3'- caCUGCgGCCGGUGC-CaGu---UCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 45108 0.66 0.509338
Target:  5'- -cGACGCCGugacgaaagaccagcGCCA-GGUCGGGAaGGUc -3'
miRNA:   3'- caCUGCGGC---------------CGGUgCCAGUUCUgCCG- -5'
24310 3' -58.6 NC_005263.2 + 9431 0.66 0.505237
Target:  5'- cGUGcCGCCcgGGCCGa--UCAAGACGGg -3'
miRNA:   3'- -CACuGCGG--CCGGUgccAGUUCUGCCg -5'
24310 3' -58.6 NC_005263.2 + 31481 0.66 0.505237
Target:  5'- -cGGCGCCuGGCC-CG-UCA--GCGGCg -3'
miRNA:   3'- caCUGCGG-CCGGuGCcAGUucUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 3348 0.66 0.505237
Target:  5'- -cGGCGCC-GCgCGCGGUCGAG-CGa- -3'
miRNA:   3'- caCUGCGGcCG-GUGCCAGUUCuGCcg -5'
24310 3' -58.6 NC_005263.2 + 45345 0.66 0.505237
Target:  5'- cGUGAUGCCGGU--CGGUCGcGACuucuGCu -3'
miRNA:   3'- -CACUGCGGCCGguGCCAGUuCUGc---CG- -5'
24310 3' -58.6 NC_005263.2 + 29044 0.66 0.505237
Target:  5'- cUGACGCgCGGCCuuGGauagcaCGAcGCGGCc -3'
miRNA:   3'- cACUGCG-GCCGGugCCa-----GUUcUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 30411 0.66 0.504215
Target:  5'- --cGCGaCCGGCUgcagcaggucgguGCGGUCGAGcGCGaGCa -3'
miRNA:   3'- cacUGC-GGCCGG-------------UGCCAGUUC-UGC-CG- -5'
24310 3' -58.6 NC_005263.2 + 42008 0.66 0.495048
Target:  5'- -aGACGagCGGCCACGuGcgCAAGACGu- -3'
miRNA:   3'- caCUGCg-GCCGGUGC-Ca-GUUCUGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.