miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24312 3' -48.9 NC_005263.2 + 35538 0.66 0.961581
Target:  5'- cCCGGCGGcGCGc-GGGCGGgcGCUACGGCg -3'
miRNA:   3'- -GGUUGUU-CGUacUCUGCU--UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 29630 0.66 0.961581
Target:  5'- aCGguACGAGCAUGAugccGGCGAGgUugaACGACa -3'
miRNA:   3'- gGU--UGUUCGUACU----CUGCUUgG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 22093 0.66 0.961581
Target:  5'- cUCGACAAGcCAUucGGCGAaguGCCGCG-Cg -3'
miRNA:   3'- -GGUUGUUC-GUAcuCUGCU---UGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 26523 0.66 0.961581
Target:  5'- gCGGCGucgacGCcgGcGGCGAGCaCGCGGCg -3'
miRNA:   3'- gGUUGUu----CGuaCuCUGCUUG-GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 17718 0.66 0.957499
Target:  5'- cCCGACGAGCGccgccgcaUGGGGCucGCacuCGGCg -3'
miRNA:   3'- -GGUUGUUCGU--------ACUCUGcuUGgu-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 43471 0.66 0.957499
Target:  5'- gUCAGCGGGCGcguuuggGAGuACGAACUACa-- -3'
miRNA:   3'- -GGUUGUUCGUa------CUC-UGCUUGGUGcug -5'
24312 3' -48.9 NC_005263.2 + 28044 0.66 0.957499
Target:  5'- uUCGGCucGAGCGUGugcuGaACGAccGCCGCGAUc -3'
miRNA:   3'- -GGUUG--UUCGUACu---C-UGCU--UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 23325 0.66 0.956219
Target:  5'- cCCGGCGAGCcgccgacgccgcccGUGAG-CGAcaguagcagGCC-CGACa -3'
miRNA:   3'- -GGUUGUUCG--------------UACUCuGCU---------UGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 44501 0.66 0.955787
Target:  5'- aCCGACGgcGGCAUccuggccgucaccGAGgucGCGAagaucaaggaguacGCCGCGACg -3'
miRNA:   3'- -GGUUGU--UCGUA-------------CUC---UGCU--------------UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 15192 0.66 0.953131
Target:  5'- aUCGAgAAGCcgGucaGCGGGCCGcCGACg -3'
miRNA:   3'- -GGUUgUUCGuaCuc-UGCUUGGU-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 10681 0.66 0.953131
Target:  5'- gCCGAC--GUAUGAcGACGAggacgGCCgcGCGACg -3'
miRNA:   3'- -GGUUGuuCGUACU-CUGCU-----UGG--UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 43403 0.66 0.94847
Target:  5'- aCCAAgAAGCAcGAcGACaGAUCGCGAa -3'
miRNA:   3'- -GGUUgUUCGUaCU-CUGcUUGGUGCUg -5'
24312 3' -48.9 NC_005263.2 + 8222 0.66 0.94847
Target:  5'- uUCGAC-AGCcgGcGACcccGACCACGGCg -3'
miRNA:   3'- -GGUUGuUCGuaCuCUGc--UUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 39699 0.67 0.945532
Target:  5'- -gGGCGAGCGcGAGcuggaaauggccggcGCGGGCCGCGuCg -3'
miRNA:   3'- ggUUGUUCGUaCUC---------------UGCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 25047 0.67 0.943512
Target:  5'- gCGGCAGGCAacacGACGAuCC-CGACg -3'
miRNA:   3'- gGUUGUUCGUacu-CUGCUuGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 34777 0.67 0.938253
Target:  5'- gCCGGCAucAGCAUGAcGC-AGCuCGCGAUg -3'
miRNA:   3'- -GGUUGU--UCGUACUcUGcUUG-GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 47764 0.67 0.938253
Target:  5'- gCCGACGGGCAUuucGGGCGG--UACGGCc -3'
miRNA:   3'- -GGUUGUUCGUAc--UCUGCUugGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 30902 0.67 0.938253
Target:  5'- gCAGCGuGCAcGAGuCGAgcGCgGCGACg -3'
miRNA:   3'- gGUUGUuCGUaCUCuGCU--UGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 15310 0.67 0.934952
Target:  5'- gUCAGCGAGCugcgcGAGGCgcgggccgacaccgaGAACCcCGACg -3'
miRNA:   3'- -GGUUGUUCGua---CUCUG---------------CUUGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 38113 0.67 0.920648
Target:  5'- cCUGGCGcGCAaGAcGGCGAACCggACGGCg -3'
miRNA:   3'- -GGUUGUuCGUaCU-CUGCUUGG--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.