miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 3' -56.1 NC_005263.2 + 27131 0.66 0.648568
Target:  5'- cGCAgGCGCGcaGCcGCGUCGGcgAUGuCCGa -3'
miRNA:   3'- -UGUaCGCGC--UGcCGUAGCCa-UAC-GGC- -5'
24313 3' -56.1 NC_005263.2 + 16410 0.66 0.637514
Target:  5'- cGCggGUGCGGuacuCGGCGUCGGc--GCUGg -3'
miRNA:   3'- -UGuaCGCGCU----GCCGUAGCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 46151 0.66 0.637514
Target:  5'- aGCAgaucGaCGCGGuugcCGGCGUCGccgGUGCCGg -3'
miRNA:   3'- -UGUa---C-GCGCU----GCCGUAGCca-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 9087 0.66 0.626455
Target:  5'- aACA-GCGCGAcCGGCAuacccggcuggaUCGuGU-UGCCGa -3'
miRNA:   3'- -UGUaCGCGCU-GCCGU------------AGC-CAuACGGC- -5'
24313 3' -56.1 NC_005263.2 + 41156 0.66 0.626455
Target:  5'- gGCGUuCGCG-CGGCGUgGGcg-GCCGu -3'
miRNA:   3'- -UGUAcGCGCuGCCGUAgCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 10884 0.66 0.6154
Target:  5'- cACcgGCGCGcgucgugaGCGGCGUaucgccgcgcUGGgggAUGCCGc -3'
miRNA:   3'- -UGuaCGCGC--------UGCCGUA----------GCCa--UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 19077 0.66 0.6154
Target:  5'- ---cGCGCGucaguACGGCGUCgcGGUGcgcaacgcacUGCCGg -3'
miRNA:   3'- uguaCGCGC-----UGCCGUAG--CCAU----------ACGGC- -5'
24313 3' -56.1 NC_005263.2 + 14248 0.66 0.604361
Target:  5'- gGCGUGCGgGcUGGCuugCGGcg-GCCGg -3'
miRNA:   3'- -UGUACGCgCuGCCGua-GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 30409 0.66 0.604361
Target:  5'- ---aGCGCGAcCGGCugcagcagGUCGGUGcgGUCGa -3'
miRNA:   3'- uguaCGCGCU-GCCG--------UAGCCAUa-CGGC- -5'
24313 3' -56.1 NC_005263.2 + 9534 0.66 0.604361
Target:  5'- cCGUGCGCGgcagcgaccgacGCGGCGcucgCGGcuUGCCa -3'
miRNA:   3'- uGUACGCGC------------UGCCGUa---GCCauACGGc -5'
24313 3' -56.1 NC_005263.2 + 12543 0.67 0.593346
Target:  5'- cACGUuCGCGGCGGCcggCGGc--GCCGu -3'
miRNA:   3'- -UGUAcGCGCUGCCGua-GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 32748 0.67 0.593346
Target:  5'- aGCGUGCGCaguacGACGuucagcgccGCGUCGGgguucucgGUGUCGg -3'
miRNA:   3'- -UGUACGCG-----CUGC---------CGUAGCCa-------UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 27774 0.67 0.586752
Target:  5'- ---gGUGCGGCGGCAggccaugcuucgcgCGGUAcaucGCCGu -3'
miRNA:   3'- uguaCGCGCUGCCGUa-------------GCCAUa---CGGC- -5'
24313 3' -56.1 NC_005263.2 + 9886 0.67 0.582364
Target:  5'- cGCAgaGCuucuCGGCGGCcaucgcgagCGGUGUGCCGa -3'
miRNA:   3'- -UGUa-CGc---GCUGCCGua-------GCCAUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 3764 0.67 0.582364
Target:  5'- ---cGCGCGggcaGCGGCA-CGGUGUucucccacacGCCGa -3'
miRNA:   3'- uguaCGCGC----UGCCGUaGCCAUA----------CGGC- -5'
24313 3' -56.1 NC_005263.2 + 18166 0.67 0.582364
Target:  5'- gGCGgcgGCGuUGGCGGCAUCGucuacGUGUCGa -3'
miRNA:   3'- -UGUa--CGC-GCUGCCGUAGCca---UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 24544 0.67 0.582364
Target:  5'- gGCGgcgGCGCgGGCGGCggCGGcUGcGCCa -3'
miRNA:   3'- -UGUa--CGCG-CUGCCGuaGCC-AUaCGGc -5'
24313 3' -56.1 NC_005263.2 + 26192 0.67 0.582364
Target:  5'- uGCGgccGCGCGGCGGCcgcgcgaugCGGcg-GCCGu -3'
miRNA:   3'- -UGUa--CGCGCUGCCGua-------GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 27375 0.67 0.560533
Target:  5'- aGCG-GCGCGGCGGCGgcCGGcgcGCUGa -3'
miRNA:   3'- -UGUaCGCGCUGCCGUa-GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 32898 0.67 0.5497
Target:  5'- uCGUG-GCGuCGGCGUCGGcg-GCCc -3'
miRNA:   3'- uGUACgCGCuGCCGUAGCCauaCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.