miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 3' -53.9 NC_005263.2 + 17485 0.66 0.760307
Target:  5'- --uGAACGC---CCUGAUCGCgCGCGGc -3'
miRNA:   3'- uuuCUUGUGguuGGGCUAGCG-GCGCU- -5'
24316 3' -53.9 NC_005263.2 + 8132 0.66 0.760307
Target:  5'- --cGAGCGCUuGCUCGAUCGCuuCGCc- -3'
miRNA:   3'- uuuCUUGUGGuUGGGCUAGCG--GCGcu -5'
24316 3' -53.9 NC_005263.2 + 19988 0.66 0.760307
Target:  5'- cAAGAcgGCGCCAcugccgucaacgACgCGAUCGgCCGCGc -3'
miRNA:   3'- uUUCU--UGUGGU------------UGgGCUAGC-GGCGCu -5'
24316 3' -53.9 NC_005263.2 + 18244 0.66 0.760307
Target:  5'- --cGAACGCCAcaagcaagaAgCCGAUCGCagGCGu -3'
miRNA:   3'- uuuCUUGUGGU---------UgGGCUAGCGg-CGCu -5'
24316 3' -53.9 NC_005263.2 + 23013 0.66 0.750801
Target:  5'- aGAAGGACACCcggcgugccagcgccACCCGAaUUGCCGguCGAc -3'
miRNA:   3'- -UUUCUUGUGGu--------------UGGGCU-AGCGGC--GCU- -5'
24316 3' -53.9 NC_005263.2 + 35181 0.66 0.749739
Target:  5'- --uGAGCACguACCCGGcuaCGCCGUu- -3'
miRNA:   3'- uuuCUUGUGguUGGGCUa--GCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 17176 0.66 0.749739
Target:  5'- --cGAAUGCgCAGCUCGcggcguacgccGUCGCCGCGc -3'
miRNA:   3'- uuuCUUGUG-GUUGGGC-----------UAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 6361 0.66 0.749739
Target:  5'- --uGAucGCGCCGugccGCCCGAagUUGCCGCc- -3'
miRNA:   3'- uuuCU--UGUGGU----UGGGCU--AGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 35563 0.66 0.739045
Target:  5'- ---cGGCGCCG--CCGGcCGCCGCGAa -3'
miRNA:   3'- uuucUUGUGGUugGGCUaGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 19784 0.66 0.739045
Target:  5'- --cGGGCucggcgGCCGACCaGAUucgCGCCGCGAu -3'
miRNA:   3'- uuuCUUG------UGGUUGGgCUA---GCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 42721 0.66 0.735814
Target:  5'- --cGAACAggucaacgccggcuUCAACCCGAUCGaCC-CGAa -3'
miRNA:   3'- uuuCUUGU--------------GGUUGGGCUAGC-GGcGCU- -5'
24316 3' -53.9 NC_005263.2 + 16475 0.66 0.728238
Target:  5'- --cGAACACCGAgaCGGcgcugCGCCGCGc -3'
miRNA:   3'- uuuCUUGUGGUUggGCUa----GCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 41564 0.66 0.728238
Target:  5'- aGAAGcAACACCGGCacauCGucagCGUCGCGAu -3'
miRNA:   3'- -UUUC-UUGUGGUUGg---GCua--GCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 26260 0.66 0.728238
Target:  5'- --cGAACGCggcgaccugauCAGCCUGAaCGCCcGCGAg -3'
miRNA:   3'- uuuCUUGUG-----------GUUGGGCUaGCGG-CGCU- -5'
24316 3' -53.9 NC_005263.2 + 23267 0.66 0.728238
Target:  5'- -uGGcGCACCGGCaCCGccGUUGCCGCc- -3'
miRNA:   3'- uuUCuUGUGGUUG-GGC--UAGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 29034 0.66 0.728238
Target:  5'- cAAGAcGCACCAGCgCGcgCagGCCGCGc -3'
miRNA:   3'- uUUCU-UGUGGUUGgGCuaG--CGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 29400 0.66 0.728238
Target:  5'- gAAAGggUugCcGCCCGcgCcuGCCGCGc -3'
miRNA:   3'- -UUUCuuGugGuUGGGCuaG--CGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 15209 0.66 0.71733
Target:  5'- -cGGGcCGCCGACgCCGAcgccacgaaacUCGCCGCc- -3'
miRNA:   3'- uuUCUuGUGGUUG-GGCU-----------AGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 26315 0.66 0.71733
Target:  5'- ---cAGCugCAGgCCGGUCGgCGUGAa -3'
miRNA:   3'- uuucUUGugGUUgGGCUAGCgGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 4858 0.66 0.706334
Target:  5'- --cGcGCGCCGugCCGAU-GCCGCu- -3'
miRNA:   3'- uuuCuUGUGGUugGGCUAgCGGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.