miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 5' -57.2 NC_005263.2 + 44903 0.66 0.607992
Target:  5'- gGGCGGCGGCcGGgccgGCUCaCcGGccucgugcucACGCa -3'
miRNA:   3'- -CCGCCGCCGuUCag--CGAG-GaCU----------UGCG- -5'
24316 5' -57.2 NC_005263.2 + 22365 0.66 0.607992
Target:  5'- cGCgGGCGGaCAGGUCGUgcaCgGcGCGCa -3'
miRNA:   3'- cCG-CCGCC-GUUCAGCGag-GaCuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 33700 0.66 0.607992
Target:  5'- cGCGGCGGCAAuaCGCgCCaGAcaccuuuCGCa -3'
miRNA:   3'- cCGCCGCCGUUcaGCGaGGaCUu------GCG- -5'
24316 5' -57.2 NC_005263.2 + 1487 0.66 0.607992
Target:  5'- aGGCGcucGCGGCAcucGGUUuCUUUcGAGCGCa -3'
miRNA:   3'- -CCGC---CGCCGU---UCAGcGAGGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 17756 0.66 0.607992
Target:  5'- cGGCGGCaGCGcGgccgCGCUCg-GcACGCg -3'
miRNA:   3'- -CCGCCGcCGUuCa---GCGAGgaCuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 44130 0.66 0.601463
Target:  5'- cGGCGGCGcGCGcccGUUacaacggccugccagGCUCgCUGGcugGCGCg -3'
miRNA:   3'- -CCGCCGC-CGUu--CAG---------------CGAG-GACU---UGCG- -5'
24316 5' -57.2 NC_005263.2 + 23937 0.66 0.597115
Target:  5'- -uUGGCGGCuug-CGCgUCgUGAGCGUg -3'
miRNA:   3'- ccGCCGCCGuucaGCG-AGgACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 1372 0.66 0.596028
Target:  5'- cGGCGGCGGCcuugaacGAG-CGCa--UGAagccGCGCu -3'
miRNA:   3'- -CCGCCGCCG-------UUCaGCGaggACU----UGCG- -5'
24316 5' -57.2 NC_005263.2 + 10871 0.66 0.586266
Target:  5'- cGGCGGaacuCGGCAccGGcgCGCgUCgUGAGCGg -3'
miRNA:   3'- -CCGCC----GCCGU--UCa-GCG-AGgACUUGCg -5'
24316 5' -57.2 NC_005263.2 + 18524 0.66 0.586266
Target:  5'- cGGCGGCGucgacaccGCGAGcgCGUUCaaGAaguucGCGCa -3'
miRNA:   3'- -CCGCCGC--------CGUUCa-GCGAGgaCU-----UGCG- -5'
24316 5' -57.2 NC_005263.2 + 13964 0.66 0.579774
Target:  5'- cGCGGCGcGCGuucgcggggcguguAGUUGCUCacguccacuucgaaCUGAcGCGCg -3'
miRNA:   3'- cCGCCGC-CGU--------------UCAGCGAG--------------GACU-UGCG- -5'
24316 5' -57.2 NC_005263.2 + 39297 0.66 0.575455
Target:  5'- aGCGGcCGGCAGG-CGCa--UGcGCGCg -3'
miRNA:   3'- cCGCC-GCCGUUCaGCGaggACuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 4577 0.66 0.575455
Target:  5'- uGCGGuCGGCAA-UCGUcuuuUCCaUGAACGg -3'
miRNA:   3'- cCGCC-GCCGUUcAGCG----AGG-ACUUGCg -5'
24316 5' -57.2 NC_005263.2 + 10400 0.66 0.575455
Target:  5'- cGGcCGGCGaGCGGGUCcggcgcgcGUUCaacGAACGCc -3'
miRNA:   3'- -CC-GCCGC-CGUUCAG--------CGAGga-CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 31262 0.66 0.575455
Target:  5'- cGCGGCgccgGGCAGGUCGaagUgCUGu-CGCa -3'
miRNA:   3'- cCGCCG----CCGUUCAGCg--AgGACuuGCG- -5'
24316 5' -57.2 NC_005263.2 + 15263 0.66 0.575455
Target:  5'- uGCuGCGGCuuGUCGCggCgCUGAaggGCGCc -3'
miRNA:   3'- cCGcCGCCGuuCAGCGa-G-GACU---UGCG- -5'
24316 5' -57.2 NC_005263.2 + 35959 0.66 0.575455
Target:  5'- cGCuGCGuGCAAGgCGCUcgaccgCCUgGAGCGCg -3'
miRNA:   3'- cCGcCGC-CGUUCaGCGA------GGA-CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 10155 0.66 0.564689
Target:  5'- aGGCGGgCaGCuuggcGUCGC-CgaGAGCGCg -3'
miRNA:   3'- -CCGCC-GcCGuu---CAGCGaGgaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 25341 0.66 0.564689
Target:  5'- cGCGGCGaCGA-UCGCuuucuggaugUCCUGAAUGUa -3'
miRNA:   3'- cCGCCGCcGUUcAGCG----------AGGACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 19873 0.66 0.564689
Target:  5'- cGGCGagcGCGGCGAG-CGCggCC--GAUGCa -3'
miRNA:   3'- -CCGC---CGCCGUUCaGCGa-GGacUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.