miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24319 3' -52.4 NC_005263.2 + 36725 0.66 0.84111
Target:  5'- uGCGCG-CaGGCCG-CGAgAAGUGGa- -3'
miRNA:   3'- gCGUGCuG-CCGGCuGUUgUUUACCau -5'
24319 3' -52.4 NC_005263.2 + 27347 0.66 0.84111
Target:  5'- gGCGCGGCcauguuacaGGCCGcCAGCGAGcGGc- -3'
miRNA:   3'- gCGUGCUG---------CCGGCuGUUGUUUaCCau -5'
24319 3' -52.4 NC_005263.2 + 24985 0.66 0.84111
Target:  5'- uGCugGcCGGCCuGGCcGCAAccgGGUAu -3'
miRNA:   3'- gCGugCuGCCGG-CUGuUGUUua-CCAU- -5'
24319 3' -52.4 NC_005263.2 + 37759 0.66 0.831958
Target:  5'- gGCauACGACGGCCGgAUGACGGcuauccGUGGc- -3'
miRNA:   3'- gCG--UGCUGCCGGC-UGUUGUU------UACCau -5'
24319 3' -52.4 NC_005263.2 + 6472 0.66 0.831958
Target:  5'- aGCGCGugGGCCG-CAguGCAAccaGGc- -3'
miRNA:   3'- gCGUGCugCCGGCuGU--UGUUua-CCau -5'
24319 3' -52.4 NC_005263.2 + 44703 0.66 0.831958
Target:  5'- gCGCAcacguCGGCGGCCGACuGCAGc----- -3'
miRNA:   3'- -GCGU-----GCUGCCGGCUGuUGUUuaccau -5'
24319 3' -52.4 NC_005263.2 + 17035 0.66 0.822581
Target:  5'- aGCGCGucGCGGCCaaGACGAuCGAcgGGc- -3'
miRNA:   3'- gCGUGC--UGCCGG--CUGUU-GUUuaCCau -5'
24319 3' -52.4 NC_005263.2 + 35761 0.66 0.822581
Target:  5'- gGCGCGguuacuGCGGCUGGCGgcgugccauaGCAGAgcaGGUAa -3'
miRNA:   3'- gCGUGC------UGCCGGCUGU----------UGUUUa--CCAU- -5'
24319 3' -52.4 NC_005263.2 + 872 0.66 0.822581
Target:  5'- aCGCugACGACGccGuuGGCGAUcgGAAUGGUGa -3'
miRNA:   3'- -GCG--UGCUGC--CggCUGUUG--UUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 3353 0.66 0.822581
Target:  5'- cCGCGCG-CGGUCGAgCGACcAGAcagugcgccaUGGUAg -3'
miRNA:   3'- -GCGUGCuGCCGGCU-GUUG-UUU----------ACCAU- -5'
24319 3' -52.4 NC_005263.2 + 1607 0.66 0.81299
Target:  5'- aGCGCGGCGGacacuUCGACGcCGAGUGcGUc -3'
miRNA:   3'- gCGUGCUGCC-----GGCUGUuGUUUAC-CAu -5'
24319 3' -52.4 NC_005263.2 + 32013 0.66 0.81299
Target:  5'- gGCACuGugGG-CGGCGagcGCAAAUGGa- -3'
miRNA:   3'- gCGUG-CugCCgGCUGU---UGUUUACCau -5'
24319 3' -52.4 NC_005263.2 + 40946 0.66 0.81299
Target:  5'- aGCgGCGAUGGCCGcGCAAUAg--GGUc -3'
miRNA:   3'- gCG-UGCUGCCGGC-UGUUGUuuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 21863 0.66 0.81299
Target:  5'- cCGCguucGCGACGGCCGGCAAgAc------ -3'
miRNA:   3'- -GCG----UGCUGCCGGCUGUUgUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 42051 0.66 0.803197
Target:  5'- gCGCGCGugaaGCGcGCCGcCAACGAAcGGg- -3'
miRNA:   3'- -GCGUGC----UGC-CGGCuGUUGUUUaCCau -5'
24319 3' -52.4 NC_005263.2 + 43393 0.66 0.803197
Target:  5'- gGCGCGGCGGaccaagaagcaCGACGACAGAUc--- -3'
miRNA:   3'- gCGUGCUGCCg----------GCUGUUGUUUAccau -5'
24319 3' -52.4 NC_005263.2 + 8683 0.66 0.793213
Target:  5'- cCG-ACGAacCGGUCGACGACAGGUGcGg- -3'
miRNA:   3'- -GCgUGCU--GCCGGCUGUUGUUUAC-Cau -5'
24319 3' -52.4 NC_005263.2 + 3209 0.66 0.792204
Target:  5'- aGCGCGGCcaggaucgGGCCGACcucgggcGACGAcaGGUAg -3'
miRNA:   3'- gCGUGCUG--------CCGGCUG-------UUGUUuaCCAU- -5'
24319 3' -52.4 NC_005263.2 + 41549 0.67 0.783049
Target:  5'- aCGCGCGGCGcGCCGugGCGGCGAu----- -3'
miRNA:   3'- -GCGUGCUGC-CGGC--UGUUGUUuaccau -5'
24319 3' -52.4 NC_005263.2 + 39287 0.67 0.772718
Target:  5'- uCGCACGccgaGCGGCCGGCAGgCGcAUGc-- -3'
miRNA:   3'- -GCGUGC----UGCCGGCUGUU-GUuUACcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.