miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 11496 0.66 0.716689
Target:  5'- uGCGCCgucgccuuguugcacUGGUCGCGcgCGAUgaaGGCG-GCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCa-GUUA---CCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 19078 0.66 0.712383
Target:  5'- cGCGCgCUGGU-GCGUCuugcagGGCuG-GCCg -3'
miRNA:   3'- -CGCG-GACUAgCGCAGuua---CCG-CaCGG- -5'
24320 3' -55.2 NC_005263.2 + 30473 0.66 0.712383
Target:  5'- aGCGCCgacgGAaCGCaUCGAUGcGCGacccgcGCCa -3'
miRNA:   3'- -CGCGGa---CUaGCGcAGUUAC-CGCa-----CGG- -5'
24320 3' -55.2 NC_005263.2 + 1282 0.66 0.712383
Target:  5'- cCGCCUGGcgCGCGUugcguuacgCGAUcGGCGUGa- -3'
miRNA:   3'- cGCGGACUa-GCGCA---------GUUA-CCGCACgg -5'
24320 3' -55.2 NC_005263.2 + 11904 0.66 0.701563
Target:  5'- gGCGCCUGcgCGC-----UGGCGU-CCu -3'
miRNA:   3'- -CGCGGACuaGCGcaguuACCGCAcGG- -5'
24320 3' -55.2 NC_005263.2 + 35351 0.66 0.701563
Target:  5'- uGgGCCUGGUCG-GUC-GUGaGCGcagacgucgcagUGCCa -3'
miRNA:   3'- -CgCGGACUAGCgCAGuUAC-CGC------------ACGG- -5'
24320 3' -55.2 NC_005263.2 + 45500 0.66 0.701563
Target:  5'- -gGCCUG-UCGCG-CAAUugGGCGaccuucacgacUGCCu -3'
miRNA:   3'- cgCGGACuAGCGCaGUUA--CCGC-----------ACGG- -5'
24320 3' -55.2 NC_005263.2 + 34715 0.66 0.690674
Target:  5'- cGCGCCUgcacacGAUCGUGUCccggccGGUaGGCGacaUGCUc -3'
miRNA:   3'- -CGCGGA------CUAGCGCAG------UUA-CCGC---ACGG- -5'
24320 3' -55.2 NC_005263.2 + 24761 0.66 0.690674
Target:  5'- cGgGCCUGcuacuGUCGC-UCAcgGGCG-GCg -3'
miRNA:   3'- -CgCGGAC-----UAGCGcAGUuaCCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 19074 0.66 0.690674
Target:  5'- -gGCCg---CGCGUCAGUacGGCGUcGCg -3'
miRNA:   3'- cgCGGacuaGCGCAGUUA--CCGCA-CGg -5'
24320 3' -55.2 NC_005263.2 + 4171 0.66 0.679728
Target:  5'- cGCGCCgcgcUCGUGcugCAGcGGCGUGUg -3'
miRNA:   3'- -CGCGGacu-AGCGCa--GUUaCCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 23520 0.66 0.679728
Target:  5'- cCGCCUGcgCcCGaCAugauauucGGCGUGCCg -3'
miRNA:   3'- cGCGGACuaGcGCaGUua------CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 15655 0.66 0.679728
Target:  5'- aCGCaaccgGAUCGaCGaCugcgcuUGGCGUGCCa -3'
miRNA:   3'- cGCGga---CUAGC-GCaGuu----ACCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 27008 0.66 0.679728
Target:  5'- gGCGUCaUGGUCa-GUUGugcGGCGUGCCg -3'
miRNA:   3'- -CGCGG-ACUAGcgCAGUua-CCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 9657 0.66 0.673138
Target:  5'- aGCGUCUcGAUCGcCGUCuugaccguggccGGCGUcacGCCg -3'
miRNA:   3'- -CGCGGA-CUAGC-GCAGuua---------CCGCA---CGG- -5'
24320 3' -55.2 NC_005263.2 + 29356 0.66 0.668736
Target:  5'- cGCGCCgccuacGAUCGCGcCGAucUGGCGcuUGaCUc -3'
miRNA:   3'- -CGCGGa-----CUAGCGCaGUU--ACCGC--AC-GG- -5'
24320 3' -55.2 NC_005263.2 + 20291 0.66 0.668736
Target:  5'- --aCCUGuccagcuUCGCGaacgCGAUGGCG-GCCg -3'
miRNA:   3'- cgcGGACu------AGCGCa---GUUACCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 39724 0.67 0.65771
Target:  5'- gGCGCg-GGcCGCGUCGAccUGGCGaGCg -3'
miRNA:   3'- -CGCGgaCUaGCGCAGUU--ACCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 46816 0.67 0.654397
Target:  5'- aCGCC-GAUCGCGUaacgcaacgcgcgcCAGgcGGCGcGCCa -3'
miRNA:   3'- cGCGGaCUAGCGCA--------------GUUa-CCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 19625 0.67 0.64666
Target:  5'- aCGCCUcGUaCGCGUUGAUGGCugaagugauGUcGCCg -3'
miRNA:   3'- cGCGGAcUA-GCGCAGUUACCG---------CA-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.