miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 3' -62.6 NC_005263.2 + 29963 0.66 0.324392
Target:  5'- ---gGCCUGCGCagcgGCGGGCAGcGCGa-- -3'
miRNA:   3'- gcgaCGGGCGCG----CGCUCGUC-CGCaug -5'
24322 3' -62.6 NC_005263.2 + 39297 0.66 0.316782
Target:  5'- aGCgGCCggcaggcgcaugCGCGCGCGAucGCAGGUugGCu -3'
miRNA:   3'- gCGaCGG------------GCGCGCGCU--CGUCCGcaUG- -5'
24322 3' -62.6 NC_005263.2 + 1279 0.66 0.316782
Target:  5'- gCGCcGCCUgGCGCGCGuuGCGuuacgcgaucGGCGUGa -3'
miRNA:   3'- -GCGaCGGG-CGCGCGCu-CGU----------CCGCAUg -5'
24322 3' -62.6 NC_005263.2 + 45426 0.66 0.309309
Target:  5'- cCGCcGCCgGCGCGacacuGCAGGC-UGCc -3'
miRNA:   3'- -GCGaCGGgCGCGCgcu--CGUCCGcAUG- -5'
24322 3' -62.6 NC_005263.2 + 27362 0.66 0.309309
Target:  5'- aGCcGUCUGC-CGaCGAGUAGGCGcGCu -3'
miRNA:   3'- gCGaCGGGCGcGC-GCUCGUCCGCaUG- -5'
24322 3' -62.6 NC_005263.2 + 35775 0.66 0.308569
Target:  5'- gGCUGgCgGCGUGCcauagcaGAGCAGguaacGCGUGCc -3'
miRNA:   3'- gCGACgGgCGCGCG-------CUCGUC-----CGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 33427 0.66 0.30197
Target:  5'- aGC-GCCgCGCGCGCGuAGCGGuCGgcCa -3'
miRNA:   3'- gCGaCGG-GCGCGCGC-UCGUCcGCauG- -5'
24322 3' -62.6 NC_005263.2 + 2262 0.66 0.30197
Target:  5'- aGUUGUUCGagcgcaGCGCGuucgccgucGGCAGGuCGUGCg -3'
miRNA:   3'- gCGACGGGCg-----CGCGC---------UCGUCC-GCAUG- -5'
24322 3' -62.6 NC_005263.2 + 21108 0.66 0.30197
Target:  5'- gGCgacgaGCCCG-GCGC-AGCGGGUGcUGCu -3'
miRNA:   3'- gCGa----CGGGCgCGCGcUCGUCCGC-AUG- -5'
24322 3' -62.6 NC_005263.2 + 29164 0.66 0.30197
Target:  5'- ---cGCCCGCaCGUG-GCGGGCGUc- -3'
miRNA:   3'- gcgaCGGGCGcGCGCuCGUCCGCAug -5'
24322 3' -62.6 NC_005263.2 + 45782 0.66 0.30197
Target:  5'- aCGgUGCUCGCGUuccGCcaguucaacGCGGGCGUGCc -3'
miRNA:   3'- -GCgACGGGCGCG---CGcu-------CGUCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 30675 0.66 0.30197
Target:  5'- uGCauCCUGCauGCGCGGGCAGGCcgGCu -3'
miRNA:   3'- gCGacGGGCG--CGCGCUCGUCCGcaUG- -5'
24322 3' -62.6 NC_005263.2 + 19068 0.66 0.30197
Target:  5'- gCGCgGCCUGCGCGCGcuGGU--GCGUcuuGCa -3'
miRNA:   3'- -GCGaCGGGCGCGCGC--UCGucCGCA---UG- -5'
24322 3' -62.6 NC_005263.2 + 40624 0.67 0.280762
Target:  5'- gCGCggcacuucgagGCCaaGCGCGCaAGC-GGCGUGCa -3'
miRNA:   3'- -GCGa----------CGGg-CGCGCGcUCGuCCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 20989 0.67 0.273961
Target:  5'- gCGC-GCCUGCGCGuCGAcguGCcGGCGUu- -3'
miRNA:   3'- -GCGaCGGGCGCGC-GCU---CGuCCGCAug -5'
24322 3' -62.6 NC_005263.2 + 6631 0.67 0.273961
Target:  5'- cCGaCUcGCCCGCGU-CGAGCAGcGCcUGCu -3'
miRNA:   3'- -GC-GA-CGGGCGCGcGCUCGUC-CGcAUG- -5'
24322 3' -62.6 NC_005263.2 + 26919 0.67 0.273961
Target:  5'- uCGCccGCgCCGCGCGCGuccGCGuccgccccguGGCGUAg -3'
miRNA:   3'- -GCGa-CG-GGCGCGCGCu--CGU----------CCGCAUg -5'
24322 3' -62.6 NC_005263.2 + 38100 0.67 0.273961
Target:  5'- uGCUgcGCCCGCaccugGCGCGcaagacGGCGaaccggacGGCGUGCg -3'
miRNA:   3'- gCGA--CGGGCG-----CGCGC------UCGU--------CCGCAUG- -5'
24322 3' -62.6 NC_005263.2 + 31256 0.67 0.273961
Target:  5'- gCGCgGCgCgGCGC-CGGGCAGGUcgaaGUGCu -3'
miRNA:   3'- -GCGaCG-GgCGCGcGCUCGUCCG----CAUG- -5'
24322 3' -62.6 NC_005263.2 + 45567 0.67 0.273961
Target:  5'- uCGCgGCCUG-GaacaGCGGuCAGGCGUACa -3'
miRNA:   3'- -GCGaCGGGCgCg---CGCUcGUCCGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.