miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 43085 0.66 0.744357
Target:  5'- cGGGCcgGC-UGUCGA---GCGCGGCGg -3'
miRNA:   3'- -CCUGuaCGcAUAGUUgcgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29014 0.66 0.744357
Target:  5'- cGGCAgUGCGUugcgcaccgCGACGCcguacugacGCGCGGCc -3'
miRNA:   3'- cCUGU-ACGCAua-------GUUGCG---------CGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 8571 0.66 0.744357
Target:  5'- cGAUcgGCGUGUCGuccguuACGC-CGCGcGCu -3'
miRNA:   3'- cCUGuaCGCAUAGU------UGCGcGCGC-CGu -5'
24322 5' -54.4 NC_005263.2 + 22513 0.66 0.733721
Target:  5'- cGGCGcacuccguUGCG-AUCAGCGUGacggGCGGCGc -3'
miRNA:   3'- cCUGU--------ACGCaUAGUUGCGCg---CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 19739 0.66 0.733721
Target:  5'- --cUAUGCG-AUCGGCGCuggcGCGCuGGCGg -3'
miRNA:   3'- ccuGUACGCaUAGUUGCG----CGCG-CCGU- -5'
24322 5' -54.4 NC_005263.2 + 25694 0.66 0.733721
Target:  5'- cGGACAcgGCGagcacggCGGCGCGUacguucGCGGCc -3'
miRNA:   3'- -CCUGUa-CGCaua----GUUGCGCG------CGCCGu -5'
24322 5' -54.4 NC_005263.2 + 17512 0.66 0.733721
Target:  5'- aGGAUgaucugAUcGCGcUGUaCAGCGCGCGCaGCGg -3'
miRNA:   3'- -CCUG------UA-CGC-AUA-GUUGCGCGCGcCGU- -5'
24322 5' -54.4 NC_005263.2 + 33953 0.66 0.722979
Target:  5'- cGACAacUGCGggcCGGCGaguGUGCGGCGa -3'
miRNA:   3'- cCUGU--ACGCauaGUUGCg--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 2428 0.66 0.722979
Target:  5'- cGGCA-GCGUGcCuugguACG-GCGCGGCAa -3'
miRNA:   3'- cCUGUaCGCAUaGu----UGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 29255 0.66 0.722979
Target:  5'- aGGCAcGCGUuguUC-ACGCGgucgaaCGCGGCAa -3'
miRNA:   3'- cCUGUaCGCAu--AGuUGCGC------GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 28424 0.66 0.722979
Target:  5'- cGGCAcGCGcGUgAACGUcgcgggcaGCGCGGCGu -3'
miRNA:   3'- cCUGUaCGCaUAgUUGCG--------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 35985 0.66 0.712145
Target:  5'- uGGAgCGcGCGUAaUGGCGCGCGCGccGCu -3'
miRNA:   3'- -CCU-GUaCGCAUaGUUGCGCGCGC--CGu -5'
24322 5' -54.4 NC_005263.2 + 6602 0.66 0.712145
Target:  5'- cGACGcgaucGCGUucggCGGCGCGCuCGGCGc -3'
miRNA:   3'- cCUGUa----CGCAua--GUUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 18912 0.66 0.712145
Target:  5'- cGGCcUGCGUcgagcgUGAC-CGCGCGGCAc -3'
miRNA:   3'- cCUGuACGCAua----GUUGcGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 11263 0.66 0.708878
Target:  5'- cGGGCGUGCGacccauucccggaaUgAUCGuGCGCGacgagcaGCGGCAa -3'
miRNA:   3'- -CCUGUACGC--------------A-UAGU-UGCGCg------CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 10308 0.66 0.705605
Target:  5'- uGGCcUGCGUgacgaaacgacgcucGUCGaucucGCGCagGCGCGGCAg -3'
miRNA:   3'- cCUGuACGCA---------------UAGU-----UGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 27328 0.66 0.70123
Target:  5'- cGACGcGCcgacgAUCAGCG-GCGCGGCc -3'
miRNA:   3'- cCUGUaCGca---UAGUUGCgCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 30436 0.66 0.70123
Target:  5'- cGGuCGaGCGcgagCAGCGUgaGCGCGGCGg -3'
miRNA:   3'- -CCuGUaCGCaua-GUUGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 32084 0.66 0.70123
Target:  5'- -aACGUGCGUc---ACGUGCGgCGGCGu -3'
miRNA:   3'- ccUGUACGCAuaguUGCGCGC-GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 43208 0.67 0.694647
Target:  5'- cGACGgcGCGcUAUCGcaGCGCGCgcuacauggugagcgGCGGCAg -3'
miRNA:   3'- cCUGUa-CGC-AUAGU--UGCGCG---------------CGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.