miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24324 3' -53.5 NC_005263.2 + 41483 0.66 0.767316
Target:  5'- gCGACUGCucgaccGCGCCGaGCGcgCcGCCGa -3'
miRNA:   3'- -GCUGACGu-----CGUGGUgUGCuaGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 14817 0.66 0.767316
Target:  5'- gGACaGCGGCACCuGCugGuacAUCgccgACCAc -3'
miRNA:   3'- gCUGaCGUCGUGG-UGugC---UAGa---UGGU- -5'
24324 3' -53.5 NC_005263.2 + 35529 0.66 0.756823
Target:  5'- cCGACUGCgcccGGCGgCGCGCGGgcgggcgCUACg- -3'
miRNA:   3'- -GCUGACG----UCGUgGUGUGCUa------GAUGgu -5'
24324 3' -53.5 NC_005263.2 + 34711 0.66 0.756823
Target:  5'- gCGAC-GCGcCugCACACGAUCgugucccgGCCGg -3'
miRNA:   3'- -GCUGaCGUcGugGUGUGCUAGa-------UGGU- -5'
24324 3' -53.5 NC_005263.2 + 28123 0.66 0.756823
Target:  5'- aCGGCaGUGGCGCCgucuuGCACG--CUGCCAg -3'
miRNA:   3'- -GCUGaCGUCGUGG-----UGUGCuaGAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 27612 0.66 0.756823
Target:  5'- uCGACgUGCGGCGCg--ACGGUCgACCAc -3'
miRNA:   3'- -GCUG-ACGUCGUGgugUGCUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 22519 0.66 0.756823
Target:  5'- gCGGCUGCGGC-CUGCuCGAU--GCCGa -3'
miRNA:   3'- -GCUGACGUCGuGGUGuGCUAgaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 9419 0.66 0.755766
Target:  5'- gCGGCUGCGGCgcuguuaGCCGCGCaccuuGAUCUugGCgAg -3'
miRNA:   3'- -GCUGACGUCG-------UGGUGUG-----CUAGA--UGgU- -5'
24324 3' -53.5 NC_005263.2 + 32496 0.66 0.746197
Target:  5'- gCGACgGCAGUuCCgACGCGAUaagcGCCAg -3'
miRNA:   3'- -GCUGaCGUCGuGG-UGUGCUAga--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 44502 0.66 0.735449
Target:  5'- cCGACgGCGGCAuCCugGCcGUC-ACCGa -3'
miRNA:   3'- -GCUGaCGUCGU-GGugUGcUAGaUGGU- -5'
24324 3' -53.5 NC_005263.2 + 9478 0.66 0.735449
Target:  5'- cCGGCUGCAGCugacGCUuCACGAU--GCCc -3'
miRNA:   3'- -GCUGACGUCG----UGGuGUGCUAgaUGGu -5'
24324 3' -53.5 NC_005263.2 + 824 0.66 0.735449
Target:  5'- gGACUGCgcuucGGCG-CGCACGucaCUACCGa -3'
miRNA:   3'- gCUGACG-----UCGUgGUGUGCua-GAUGGU- -5'
24324 3' -53.5 NC_005263.2 + 34009 0.67 0.724591
Target:  5'- uGGCUGCGucGCGgCGCGCGAUCcagaGCUg -3'
miRNA:   3'- gCUGACGU--CGUgGUGUGCUAGa---UGGu -5'
24324 3' -53.5 NC_005263.2 + 21042 0.67 0.724591
Target:  5'- aCGGCgUGCAGCAugcaacgcauauCCACgACGAUCcacaaggcgGCCAg -3'
miRNA:   3'- -GCUG-ACGUCGU------------GGUG-UGCUAGa--------UGGU- -5'
24324 3' -53.5 NC_005263.2 + 46653 0.67 0.718028
Target:  5'- -uGCUGCAGCGCCGCGagcgccgcgaagccuCGcgCgcaGCCAa -3'
miRNA:   3'- gcUGACGUCGUGGUGU---------------GCuaGa--UGGU- -5'
24324 3' -53.5 NC_005263.2 + 20983 0.67 0.713636
Target:  5'- gCGGCUGC-GCGCCuGCGCG-UCgacgUGCCGg -3'
miRNA:   3'- -GCUGACGuCGUGG-UGUGCuAG----AUGGU- -5'
24324 3' -53.5 NC_005263.2 + 26857 0.67 0.713636
Target:  5'- ----aGCAGCACUGCGCGG-CUACUu -3'
miRNA:   3'- gcugaCGUCGUGGUGUGCUaGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 10021 0.67 0.691485
Target:  5'- gGGC-GCAGCACCGCcgcCGAgCUGCUc -3'
miRNA:   3'- gCUGaCGUCGUGGUGu--GCUaGAUGGu -5'
24324 3' -53.5 NC_005263.2 + 16715 0.67 0.691485
Target:  5'- -aGCUGCAGCgcaccuACCGCGCGAgCaGCCc -3'
miRNA:   3'- gcUGACGUCG------UGGUGUGCUaGaUGGu -5'
24324 3' -53.5 NC_005263.2 + 13465 0.67 0.680312
Target:  5'- gGGCUGCcuGCGCUGCcauggggaACGAUCUACg- -3'
miRNA:   3'- gCUGACGu-CGUGGUG--------UGCUAGAUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.