miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 3' -55.2 NC_005263.2 + 47375 0.67 0.582897
Target:  5'- gCGGCgcguuCGAUGCGCGCgaGCACa -3'
miRNA:   3'- aGUCGaugguGUUGCGUGCGgaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 47364 0.66 0.658331
Target:  5'- aUCAGgUGCUGCAggGCGCAacggcaaucaaccuCGCCacgGCGCu -3'
miRNA:   3'- -AGUCgAUGGUGU--UGCGU--------------GCGGa--CGUG- -5'
24326 3' -55.2 NC_005263.2 + 47215 0.7 0.395556
Target:  5'- cCGGCggcgACCGCcGCGCugaacgaaGCGCCggccgGCACg -3'
miRNA:   3'- aGUCGa---UGGUGuUGCG--------UGCGGa----CGUG- -5'
24326 3' -55.2 NC_005263.2 + 46926 0.66 0.639171
Target:  5'- --cGCUGCCGCGcaGCACGag-GCACa -3'
miRNA:   3'- aguCGAUGGUGUugCGUGCggaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 46802 0.75 0.192083
Target:  5'- aUCAGCUgcaauucacGCCgaucgcguaacGCAACGCGCGCCaggcgGCGCg -3'
miRNA:   3'- -AGUCGA---------UGG-----------UGUUGCGUGCGGa----CGUG- -5'
24326 3' -55.2 NC_005263.2 + 46657 0.67 0.594104
Target:  5'- gCAGC-GCCGCgAGCGCcgcgaaGCCUcGCGCg -3'
miRNA:   3'- aGUCGaUGGUG-UUGCGug----CGGA-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 46247 0.67 0.548469
Target:  5'- -aGGCgcGCCAgAAcCGCACgucgccgGCCUGCACa -3'
miRNA:   3'- agUCGa-UGGUgUU-GCGUG-------CGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 45811 0.78 0.133383
Target:  5'- -gGGCgugccgGCCACGGCGCACGaCCUGC-Cg -3'
miRNA:   3'- agUCGa-----UGGUGUUGCGUGC-GGACGuG- -5'
24326 3' -55.2 NC_005263.2 + 45728 0.69 0.474525
Target:  5'- cCGGcCUGCCGCucgguGCugaggguugGCACgGCCUGCGCu -3'
miRNA:   3'- aGUC-GAUGGUGu----UG---------CGUG-CGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 45436 1.09 0.000668
Target:  5'- aUCAGCUACCACAACGCACGCCUGCACc -3'
miRNA:   3'- -AGUCGAUGGUGUUGCGUGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 45194 0.67 0.594104
Target:  5'- aCGGUUACgACGGC-CGCGCa-GCACg -3'
miRNA:   3'- aGUCGAUGgUGUUGcGUGCGgaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 44762 0.67 0.582897
Target:  5'- --cGCUcgACCGC-GCGCgGCGCCggcgGCGCg -3'
miRNA:   3'- aguCGA--UGGUGuUGCG-UGCGGa---CGUG- -5'
24326 3' -55.2 NC_005263.2 + 44725 0.68 0.506124
Target:  5'- gCAGCaccacacgaucUACCAUGGCGCACuGUCUGguCg -3'
miRNA:   3'- aGUCG-----------AUGGUGUUGCGUG-CGGACguG- -5'
24326 3' -55.2 NC_005263.2 + 44188 0.68 0.527681
Target:  5'- gUCGGcCUGCCGCcauUGC-CGCCcgGCGCu -3'
miRNA:   3'- -AGUC-GAUGGUGuu-GCGuGCGGa-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 44151 0.67 0.582897
Target:  5'- aCGGcCUGCCAgGcuCGCugGCUgGCGCg -3'
miRNA:   3'- aGUC-GAUGGUgUu-GCGugCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 44123 0.7 0.414504
Target:  5'- --cGCUGCUcgGCGGCGCGCGCCcGuUACa -3'
miRNA:   3'- aguCGAUGG--UGUUGCGUGCGGaC-GUG- -5'
24326 3' -55.2 NC_005263.2 + 43216 0.7 0.386295
Target:  5'- --cGCUAUCGCAGCGCGCGCUa-CAUg -3'
miRNA:   3'- aguCGAUGGUGUUGCGUGCGGacGUG- -5'
24326 3' -55.2 NC_005263.2 + 43109 0.69 0.463187
Target:  5'- uUCAGCUcaucaaaGCgCGCAACGCucgUGCCUggaGCGCg -3'
miRNA:   3'- -AGUCGA-------UG-GUGUUGCGu--GCGGA---CGUG- -5'
24326 3' -55.2 NC_005263.2 + 42892 0.7 0.386295
Target:  5'- -uGGCgUGCCGC-GCGCuCGCCUGgACg -3'
miRNA:   3'- agUCG-AUGGUGuUGCGuGCGGACgUG- -5'
24326 3' -55.2 NC_005263.2 + 41980 0.71 0.359381
Target:  5'- gCGGgUACCugAACG-ACGCCgaGCACa -3'
miRNA:   3'- aGUCgAUGGugUUGCgUGCGGa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.