miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 5' -56.7 NC_005263.2 + 47402 0.72 0.290779
Target:  5'- aCGGCgcucGCGGGCGgcgGCaCGAUCGCGcUCa -3'
miRNA:   3'- -GCCG----CGCUUGCa--CG-GCUAGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 46439 0.67 0.534644
Target:  5'- gCGGCGCGcuacaaaaAGC-UGCCGGUCGaccaguucaCGAUCa -3'
miRNA:   3'- -GCCGCGC--------UUGcACGGCUAGC---------GCUAGa -5'
24326 5' -56.7 NC_005263.2 + 46184 0.69 0.46292
Target:  5'- cCGGCGCGcuCGUGCaGAcgCGCGG-CUg -3'
miRNA:   3'- -GCCGCGCuuGCACGgCUa-GCGCUaGA- -5'
24326 5' -56.7 NC_005263.2 + 45470 1.08 0.000788
Target:  5'- cCGGCGCGAACGUGCCGAUCGCGAUCUa -3'
miRNA:   3'- -GCCGCGCUUGCACGGCUAGCGCUAGA- -5'
24326 5' -56.7 NC_005263.2 + 45332 0.68 0.512656
Target:  5'- cCGGuCGCGAGguCGUgaugccgGUCGGUCGCGAcuUCUg -3'
miRNA:   3'- -GCC-GCGCUU--GCA-------CGGCUAGCGCU--AGA- -5'
24326 5' -56.7 NC_005263.2 + 44999 0.68 0.482929
Target:  5'- aGGCGCGcAugGcGCCGuggcUCGCGAa-- -3'
miRNA:   3'- gCCGCGC-UugCaCGGCu---AGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 44896 0.66 0.625154
Target:  5'- uCGGgGCGGGCGgcgGCCGGgccggcucaccggccUCGUGcUCa -3'
miRNA:   3'- -GCCgCGCUUGCa--CGGCU---------------AGCGCuAGa -5'
24326 5' -56.7 NC_005263.2 + 41686 0.68 0.493089
Target:  5'- gGGCGCGGACugcgGCCGuaCGCGggCa -3'
miRNA:   3'- gCCGCGCUUGca--CGGCuaGCGCuaGa -5'
24326 5' -56.7 NC_005263.2 + 41496 0.71 0.344804
Target:  5'- -cGCGcCGAGCGcgccGCCGAaCGCGAUCg -3'
miRNA:   3'- gcCGC-GCUUGCa---CGGCUaGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 41483 0.67 0.555886
Target:  5'- uCGaCGCGGGCGagucgGCCG-UCGUGAUCc -3'
miRNA:   3'- -GCcGCGCUUGCa----CGGCuAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 41165 0.72 0.313084
Target:  5'- gCGGCGUGGGCG-GCCG-UCGuCGAUa- -3'
miRNA:   3'- -GCCGCGCUUGCaCGGCuAGC-GCUAga -5'
24326 5' -56.7 NC_005263.2 + 39546 0.67 0.577367
Target:  5'- aGGCGacuGGACGacGCUGGUCGCGGcauUCa -3'
miRNA:   3'- gCCGCg--CUUGCa-CGGCUAGCGCU---AGa -5'
24326 5' -56.7 NC_005263.2 + 39307 0.66 0.620793
Target:  5'- aGGCGCauGCGcGCgCGAUCGCaGGUUg -3'
miRNA:   3'- gCCGCGcuUGCaCG-GCUAGCG-CUAGa -5'
24326 5' -56.7 NC_005263.2 + 38633 0.77 0.135362
Target:  5'- cCGGCGCGAAUGaaGCCGcGUCGCGcAUCg -3'
miRNA:   3'- -GCCGCGCUUGCa-CGGC-UAGCGC-UAGa -5'
24326 5' -56.7 NC_005263.2 + 38339 0.67 0.566601
Target:  5'- uCGGUGCGAugGaugcgaaGUCGGUgcgcacCGCGAUCg -3'
miRNA:   3'- -GCCGCGCUugCa------CGGCUA------GCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 37843 0.7 0.378767
Target:  5'- gCGGCGCGAuGCGaaGCgcAUCGCGAUCg -3'
miRNA:   3'- -GCCGCGCU-UGCa-CGgcUAGCGCUAGa -5'
24326 5' -56.7 NC_005263.2 + 37827 0.67 0.545232
Target:  5'- cCGGCGCucAUGUcGCCGAcgcggcguuUCGCGAa-- -3'
miRNA:   3'- -GCCGCGcuUGCA-CGGCU---------AGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 33899 0.7 0.405672
Target:  5'- uGcGCGCGAACGgcacGCCG-UCGCGGa-- -3'
miRNA:   3'- gC-CGCGCUUGCa---CGGCuAGCGCUaga -5'
24326 5' -56.7 NC_005263.2 + 33673 0.68 0.493089
Target:  5'- aGGCGCGcGCGcacGCCG-UCGCaugGGUCUg -3'
miRNA:   3'- gCCGCGCuUGCa--CGGCuAGCG---CUAGA- -5'
24326 5' -56.7 NC_005263.2 + 31498 0.76 0.168371
Target:  5'- gCGGCGCGAGC-UGCUGcUCGCGcgCg -3'
miRNA:   3'- -GCCGCGCUUGcACGGCuAGCGCuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.