miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 3' -55.5 NC_005263.2 + 48004 0.66 0.717998
Target:  5'- cUCGACaCGAcUACCGGcaccgGCgGGCaGGCGCu -3'
miRNA:   3'- -GGCUG-GUU-AUGGCU-----UGaCCG-CCGCGc -5'
24327 3' -55.5 NC_005263.2 + 16470 0.66 0.717998
Target:  5'- aCUGACgAAcACCGAgacggcGCUGcGCcGCGCGg -3'
miRNA:   3'- -GGCUGgUUaUGGCU------UGAC-CGcCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 9443 0.66 0.717998
Target:  5'- gCCGAUCAAga-CGGGCaccacgGGCagcGGCGCGc -3'
miRNA:   3'- -GGCUGGUUaugGCUUGa-----CCG---CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 7214 0.66 0.717998
Target:  5'- gCGACCAucGCCGGcgACcagaaGGCGcGCGCc -3'
miRNA:   3'- gGCUGGUuaUGGCU--UGa----CCGC-CGCGc -5'
24327 3' -55.5 NC_005263.2 + 40049 0.66 0.717998
Target:  5'- -gGACUGAUcACgGAACUcGcGCGGCGCc -3'
miRNA:   3'- ggCUGGUUA-UGgCUUGA-C-CGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 38385 0.66 0.717998
Target:  5'- gCCGcCCGAgGCCGAACUGaucgacgcacuGUcGCGCGu -3'
miRNA:   3'- -GGCuGGUUaUGGCUUGAC-----------CGcCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 29216 0.66 0.717998
Target:  5'- gCCGGCgCGuauuUGCCGucggcGCgcaGCGGCGCGc -3'
miRNA:   3'- -GGCUG-GUu---AUGGCu----UGac-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 13386 0.66 0.707331
Target:  5'- aCCGGCCGggACaCGAucgUGuGCaGGCGCGu -3'
miRNA:   3'- -GGCUGGUuaUG-GCUug-AC-CG-CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 11941 0.66 0.707331
Target:  5'- gCCGGCCGGUAUCGAcguucGCcucGaGCGcGCGCc -3'
miRNA:   3'- -GGCUGGUUAUGGCU-----UGa--C-CGC-CGCGc -5'
24327 3' -55.5 NC_005263.2 + 15330 0.66 0.707331
Target:  5'- gCgGGCCGAcACCGAGaaccccgacGCGGCGCu -3'
miRNA:   3'- -GgCUGGUUaUGGCUUgac------CGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 15825 0.66 0.696592
Target:  5'- -aGACCGGcuCCGAcCUGGC-GCGCu -3'
miRNA:   3'- ggCUGGUUauGGCUuGACCGcCGCGc -5'
24327 3' -55.5 NC_005263.2 + 5049 0.66 0.696592
Target:  5'- gCCGACUAuugGCCG-ACgucGGCGuCGCGc -3'
miRNA:   3'- -GGCUGGUua-UGGCuUGa--CCGCcGCGC- -5'
24327 3' -55.5 NC_005263.2 + 9168 0.66 0.696592
Target:  5'- uUGGCC-GUGCCGAucagcgcgaagcgacGCgggugcgcaaacgGGCGGCGCu -3'
miRNA:   3'- gGCUGGuUAUGGCU---------------UGa------------CCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 5245 0.66 0.68579
Target:  5'- gCGAUCAGgcGCCGucaucAGCgGGCGGUGCc -3'
miRNA:   3'- gGCUGGUUa-UGGC-----UUGaCCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 27644 0.66 0.68579
Target:  5'- gCCGAUCGAcgugaCGAACgucucGGCGGCgGCa -3'
miRNA:   3'- -GGCUGGUUaug--GCUUGa----CCGCCG-CGc -5'
24327 3' -55.5 NC_005263.2 + 28937 0.66 0.68579
Target:  5'- gCGGCCAcgaGCCGcGCcGGCGGaUGCa -3'
miRNA:   3'- gGCUGGUua-UGGCuUGaCCGCC-GCGc -5'
24327 3' -55.5 NC_005263.2 + 39693 0.66 0.684708
Target:  5'- gCGAUgGGgcgaGCgCGAGCUGGaaauggcCGGCGCGg -3'
miRNA:   3'- gGCUGgUUa---UG-GCUUGACC-------GCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 5128 0.66 0.674939
Target:  5'- gUCGAgCuuGUugCGAucCUGGUGGUGCa -3'
miRNA:   3'- -GGCUgGu-UAugGCUu-GACCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 24822 0.66 0.674939
Target:  5'- uUCGGCCuauacgGCCGGcgGCaacGGCGGUGCc -3'
miRNA:   3'- -GGCUGGuua---UGGCU--UGa--CCGCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 21050 0.66 0.674939
Target:  5'- gCGGCUuccUGCCcGACgGGCGGcCGCGc -3'
miRNA:   3'- gGCUGGuu-AUGGcUUGaCCGCC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.