miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 5' -54.3 NC_005263.2 + 2080 0.66 0.786667
Target:  5'- aCCGGcgauaUCGuGCCAGUugucgguguaaUCGgGGUCGCCGu -3'
miRNA:   3'- cGGCC-----AGC-UGGUCA-----------AGUgCUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 17710 0.66 0.786667
Target:  5'- aGCCGGUCGcGCUAuccgaaGCGAUCGCg- -3'
miRNA:   3'- -CGGCCAGC-UGGUcaag--UGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 26533 0.66 0.786667
Target:  5'- cGCCGG-CGGCgAGcaCGCGG-CGCUGg -3'
miRNA:   3'- -CGGCCaGCUGgUCaaGUGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 8404 0.66 0.786667
Target:  5'- cGCCGGcCauuuCCAGcUCGCGcUCGCCc -3'
miRNA:   3'- -CGGCCaGcu--GGUCaAGUGCuAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 32298 0.66 0.776723
Target:  5'- aGCCGGUCuuGACgAGUgUCACG-UCgAUCGa -3'
miRNA:   3'- -CGGCCAG--CUGgUCA-AGUGCuAG-UGGC- -5'
24327 5' -54.3 NC_005263.2 + 15099 0.66 0.776723
Target:  5'- aCCGaGUCGuACCAGUUCuCGAgC-CCGu -3'
miRNA:   3'- cGGC-CAGC-UGGUCAAGuGCUaGuGGC- -5'
24327 5' -54.3 NC_005263.2 + 24399 0.66 0.776723
Target:  5'- gGuuGGUCuGugCGGUcaUguCGAUCGCCu -3'
miRNA:   3'- -CggCCAG-CugGUCA--AguGCUAGUGGc -5'
24327 5' -54.3 NC_005263.2 + 21333 0.66 0.766628
Target:  5'- cGUCGGUCuGAU--GUUCGCGAgcgCGCUGa -3'
miRNA:   3'- -CGGCCAG-CUGguCAAGUGCUa--GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 37240 0.66 0.766628
Target:  5'- cGCCGGU--GCCgAGUUCcgccGCGA-CGCCGu -3'
miRNA:   3'- -CGGCCAgcUGG-UCAAG----UGCUaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 26133 0.66 0.766628
Target:  5'- aGCgGGUCGAC--GUUgGCGAUCAaCUGc -3'
miRNA:   3'- -CGgCCAGCUGguCAAgUGCUAGU-GGC- -5'
24327 5' -54.3 NC_005263.2 + 35535 0.66 0.766628
Target:  5'- cGCCGG-CGAUCGGcagCACGuUCGCa- -3'
miRNA:   3'- -CGGCCaGCUGGUCaa-GUGCuAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 19544 0.66 0.756395
Target:  5'- uGCCGuUCuAUCAGggCACGAUCGCa- -3'
miRNA:   3'- -CGGCcAGcUGGUCaaGUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 32396 0.66 0.756395
Target:  5'- cGCUGGUCGaACCGcccGUagUCgcuGCGAgcUCGCCGg -3'
miRNA:   3'- -CGGCCAGC-UGGU---CA--AG---UGCU--AGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 6128 0.66 0.756395
Target:  5'- gGCCGGUaugUCGGUgCGCGAUCGCa- -3'
miRNA:   3'- -CGGCCAgcuGGUCAaGUGCUAGUGgc -5'
24327 5' -54.3 NC_005263.2 + 33114 0.66 0.746034
Target:  5'- aGCCGG-CGAgCAGaacgUCACgcgcaGAUCGCUGc -3'
miRNA:   3'- -CGGCCaGCUgGUCa---AGUG-----CUAGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 2769 0.66 0.746034
Target:  5'- uGCCGGUCGugUucgUCACGA---CCGu -3'
miRNA:   3'- -CGGCCAGCugGucaAGUGCUaguGGC- -5'
24327 5' -54.3 NC_005263.2 + 45331 0.66 0.746034
Target:  5'- cCCGGUCGcgaggucgugauGCCGGUcggUCGCGAcuUCugCu -3'
miRNA:   3'- cGGCCAGC------------UGGUCA---AGUGCU--AGugGc -5'
24327 5' -54.3 NC_005263.2 + 30436 0.66 0.741857
Target:  5'- uGCUGGUCGACC-GUgccaaaaCGCGGgucgaugccguagCGCCGa -3'
miRNA:   3'- -CGGCCAGCUGGuCAa------GUGCUa------------GUGGC- -5'
24327 5' -54.3 NC_005263.2 + 4841 0.67 0.735559
Target:  5'- aGUCGGUUG-CCcGUaCGCGcgCGCCGu -3'
miRNA:   3'- -CGGCCAGCuGGuCAaGUGCuaGUGGC- -5'
24327 5' -54.3 NC_005263.2 + 20101 0.67 0.735559
Target:  5'- uCUGGUCGACCA----GCG-UCGCCGc -3'
miRNA:   3'- cGGCCAGCUGGUcaagUGCuAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.