miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 3' -53 NC_005263.2 + 35635 0.66 0.820396
Target:  5'- uGCGcGCCGcCgGUAUCGUGUuccgcgcggGCGACAa -3'
miRNA:   3'- -CGCaCGGCaGaUAUGGCACG---------CGUUGU- -5'
24328 3' -53 NC_005263.2 + 44349 0.66 0.820396
Target:  5'- cCGUGCCG-CUGc-CCGcGCGCgAGCAg -3'
miRNA:   3'- cGCACGGCaGAUauGGCaCGCG-UUGU- -5'
24328 3' -53 NC_005263.2 + 24703 0.66 0.820396
Target:  5'- gGCGcGCCGaacGUGCCGggcgGCGCAggcgGCAa -3'
miRNA:   3'- -CGCaCGGCagaUAUGGCa---CGCGU----UGU- -5'
24328 3' -53 NC_005263.2 + 39076 0.66 0.810836
Target:  5'- uCGUaGCCGgcuc-GCCGUcGCGCGGCAc -3'
miRNA:   3'- cGCA-CGGCagauaUGGCA-CGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 2432 0.66 0.810836
Target:  5'- aGCGUGCC-UUgGUACg--GCGCGGCAa -3'
miRNA:   3'- -CGCACGGcAGaUAUGgcaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 9657 0.66 0.809869
Target:  5'- aGCGUcucgaucGCCGUCUugACCGUG-GcCGGCGu -3'
miRNA:   3'- -CGCA-------CGGCAGAuaUGGCACgC-GUUGU- -5'
24328 3' -53 NC_005263.2 + 17465 0.66 0.801078
Target:  5'- cGCGUucgaCGUCaacGCCGgccgGCGCAGCAu -3'
miRNA:   3'- -CGCAcg--GCAGauaUGGCa---CGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 42893 0.66 0.791134
Target:  5'- gGCGUGCCGcgCgcucGCCuggacgcgaGUGCGCgAGCAa -3'
miRNA:   3'- -CGCACGGCa-Gaua-UGG---------CACGCG-UUGU- -5'
24328 3' -53 NC_005263.2 + 12388 0.66 0.781017
Target:  5'- gGCGUcucGCCGUCUucgaccuUGCCG-GC-CGGCAg -3'
miRNA:   3'- -CGCA---CGGCAGAu------AUGGCaCGcGUUGU- -5'
24328 3' -53 NC_005263.2 + 18309 0.67 0.75715
Target:  5'- cGCGUucaaaggcaauacaGCCGaCguaACgGUGCGCAACAa -3'
miRNA:   3'- -CGCA--------------CGGCaGauaUGgCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 2698 0.67 0.749739
Target:  5'- cGCG-GCCGcUCggcagGUGCa-UGCGCAGCGc -3'
miRNA:   3'- -CGCaCGGC-AGa----UAUGgcACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 18868 0.67 0.739045
Target:  5'- cGCGUGCC-UCggcgcGCCGcUGCGCGccgACGg -3'
miRNA:   3'- -CGCACGGcAGaua--UGGC-ACGCGU---UGU- -5'
24328 3' -53 NC_005263.2 + 25829 0.67 0.728238
Target:  5'- uGCGgGCCGUUUGUcguuUC-UGCGCAACGu -3'
miRNA:   3'- -CGCaCGGCAGAUAu---GGcACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 37362 0.67 0.728238
Target:  5'- aCG-GCCG-C-AUGCgCGUGCGCGACu -3'
miRNA:   3'- cGCaCGGCaGaUAUG-GCACGCGUUGu -5'
24328 3' -53 NC_005263.2 + 19148 0.67 0.728238
Target:  5'- uGCGcGUCGUCgugACCGUgcauccgccgGCGCGGCu -3'
miRNA:   3'- -CGCaCGGCAGauaUGGCA----------CGCGUUGu -5'
24328 3' -53 NC_005263.2 + 11265 0.67 0.728238
Target:  5'- gGCGUGCgacccauuccCGgaaugAUCGUGCGCGACGa -3'
miRNA:   3'- -CGCACG----------GCagauaUGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 35578 0.67 0.71733
Target:  5'- uGCG-GCCGUCagaaucugACCGgGCGCAAa- -3'
miRNA:   3'- -CGCaCGGCAGaua-----UGGCaCGCGUUgu -5'
24328 3' -53 NC_005263.2 + 9999 0.67 0.71733
Target:  5'- ---cGCCGUCUugcgcgccagGUGCgG-GCGCAGCAc -3'
miRNA:   3'- cgcaCGGCAGA----------UAUGgCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 27988 0.67 0.71733
Target:  5'- cGCGcuUGCCGUa---ACCcUGCGCGGCGa -3'
miRNA:   3'- -CGC--ACGGCAgauaUGGcACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 30446 0.68 0.706334
Target:  5'- cCGUGCCaaaacgcggGUCgAUGCCGUaGCGcCGACGg -3'
miRNA:   3'- cGCACGG---------CAGaUAUGGCA-CGC-GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.