miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 5' -54.8 NC_005263.2 + 47681 0.66 0.702759
Target:  5'- -gCGGCGauccUCGugcuguGCGGCA--AGCUGCUc -3'
miRNA:   3'- gaGCCGU----AGCu-----UGCCGUguUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 44127 0.66 0.702759
Target:  5'- gCUCGGCGgcgCGcgcccguuacAACGGCcugcCAGGCUcGCUg -3'
miRNA:   3'- -GAGCCGUa--GC----------UUGCCGu---GUUCGA-CGA- -5'
24328 5' -54.8 NC_005263.2 + 36926 0.66 0.702759
Target:  5'- -aUGGCuauacCGGACGGCACGcGCUauGCUc -3'
miRNA:   3'- gaGCCGua---GCUUGCCGUGUuCGA--CGA- -5'
24328 5' -54.8 NC_005263.2 + 29233 0.66 0.702759
Target:  5'- gUCGGCG-CGcAGCGGCGCGccgaGGCacGCg -3'
miRNA:   3'- gAGCCGUaGC-UUGCCGUGU----UCGa-CGa -5'
24328 5' -54.8 NC_005263.2 + 44887 0.66 0.691697
Target:  5'- -cCGGCGUCau-CGGgGCGGGCgGCg -3'
miRNA:   3'- gaGCCGUAGcuuGCCgUGUUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 20671 0.66 0.691697
Target:  5'- -gCGGcCGUCGAaagcguguucgGCGGCGCGAaacCUGCg -3'
miRNA:   3'- gaGCC-GUAGCU-----------UGCCGUGUUc--GACGa -5'
24328 5' -54.8 NC_005263.2 + 14889 0.66 0.691697
Target:  5'- gUCGGC--CGAgugcagguGCGGCACGAG-UGCg -3'
miRNA:   3'- gAGCCGuaGCU--------UGCCGUGUUCgACGa -5'
24328 5' -54.8 NC_005263.2 + 39236 0.66 0.690587
Target:  5'- -cCGGCAgcaCGGGCcgcguaucccgucGGC-CGAGCUGCg -3'
miRNA:   3'- gaGCCGUa--GCUUG-------------CCGuGUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 4244 0.66 0.680574
Target:  5'- gUCGGCGUCaGGAUGccGCGCAcGUUGUUg -3'
miRNA:   3'- gAGCCGUAG-CUUGC--CGUGUuCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 47244 0.66 0.680574
Target:  5'- -aCGGCGUCGucagcgugccuAUGGCACAGGgCaGCa -3'
miRNA:   3'- gaGCCGUAGCu----------UGCCGUGUUC-GaCGa -5'
24328 5' -54.8 NC_005263.2 + 22324 0.66 0.680574
Target:  5'- -cCGGCA-CGcucAGC-GCGCGGGCUGCUu -3'
miRNA:   3'- gaGCCGUaGC---UUGcCGUGUUCGACGA- -5'
24328 5' -54.8 NC_005263.2 + 46702 0.66 0.669403
Target:  5'- gUCGGCAagCGcuACGaGUACAAGCgcgGCUu -3'
miRNA:   3'- gAGCCGUa-GCu-UGC-CGUGUUCGa--CGA- -5'
24328 5' -54.8 NC_005263.2 + 31549 0.66 0.668284
Target:  5'- cCUUGGCGUCGcugcccaGGCGGCGCGccgUGCUc -3'
miRNA:   3'- -GAGCCGUAGC-------UUGCCGUGUucgACGA- -5'
24328 5' -54.8 NC_005263.2 + 33206 0.66 0.666044
Target:  5'- gCUUGGCGcacUCGugccgcaccugcacuCGGCcgACAAGCUGCg -3'
miRNA:   3'- -GAGCCGU---AGCuu-------------GCCG--UGUUCGACGa -5'
24328 5' -54.8 NC_005263.2 + 42307 0.66 0.646963
Target:  5'- gUCGaGCAcuUCGAGaCGGCGC-AGCgGCg -3'
miRNA:   3'- gAGC-CGU--AGCUU-GCCGUGuUCGaCGa -5'
24328 5' -54.8 NC_005263.2 + 23989 0.66 0.646963
Target:  5'- aUCGGCGgcuaccCGAAaGGCGCcgcGCUGCa -3'
miRNA:   3'- gAGCCGUa-----GCUUgCCGUGuu-CGACGa -5'
24328 5' -54.8 NC_005263.2 + 9540 0.66 0.646963
Target:  5'- -gCGGCAgCGAccgacGCGGCGCucGCgGCUu -3'
miRNA:   3'- gaGCCGUaGCU-----UGCCGUGuuCGaCGA- -5'
24328 5' -54.8 NC_005263.2 + 32310 0.67 0.640216
Target:  5'- -aCGGUGUCGGACGaGCAgcgcgcaguggucguCGAGCaGCUg -3'
miRNA:   3'- gaGCCGUAGCUUGC-CGU---------------GUUCGaCGA- -5'
24328 5' -54.8 NC_005263.2 + 5238 0.67 0.639091
Target:  5'- aCUCGGCuaugaacccggccggGUCGAacgugauGCGGUACGggGGCgUGCUc -3'
miRNA:   3'- -GAGCCG---------------UAGCU-------UGCCGUGU--UCG-ACGA- -5'
24328 5' -54.8 NC_005263.2 + 34007 0.67 0.635716
Target:  5'- gUUGGCugCGucGCGGCGCGcgauccagAGCUGCUg -3'
miRNA:   3'- gAGCCGuaGCu-UGCCGUGU--------UCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.